Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g1098 ATGGGGAAGAAGAAGAAAAGAGCATCGATTAAAGTGTGGTGTTATTACTGCGATCGAGAATTCGATGATGAGAAGATTCTAGTGCAGCATCAGAAAGCGAAACATTTCAAATGTCACGTTTGTCACAAAAAGTTCTCTACCACTGGAAGCATGATCATCCACGTTCTTCAGGTTCACAAAGAATCCGTCACCAAGGTGCCCAATGCAAAACCTGACAGAGACTCTATAGACATTGAAATATACGGAATGCAAGGGATCCCACCAGATATTTTGGATGCTCATTATAGAGAGGAAGAGGATCATGTTCCATCAAAGGCTGCCAAGGTGGATTTCCCATCAACCCAGCTTGTAGGTGGAGTAGCGCCAGCATCATTCGGTATAAGATTTCCTCCTCAACCAAACTGGGGCCCAAGGCCACCAATATATAATCCAGCTGTACCTGTACCTCCGACAGCTTGGGCGGTTCCACCTCGACCTCAACCCTGGTATCCACAGCCTCCAGCTGTTTCATTTGCTCCTCCTGCCCCATATGTACAGCAGCCATTATTTCCTGTGCATAATGTGAGACCCCCACTACCCTCAACCACTTTGCCTGAACTCTCAACTCTGATTACTCCCGGATTACCTGCATCTACACCTTCTGTTCCAGTTTCGCAACCTCTATTTCCTGTTATTGGAACTAACTATACGCCAACTCAAAGTTCAACATTTCCAGCCACAACGCTATCATCTAATGTTCAATCTGTAACTCCAGGGCTTTTGTCAGGTGTACTTGTTAATGCACATTCAGTTGTTAACACTTCTTCTGTGACAAATAGTTATCAGGCAATAGGGGCTCCAGGAGGGATAGCTAGTAACTCACATTCATATTCTTCTGGTCCAAATACAGGTGGTCCTTCAATTGGACCACCCCCAGTAATTGCGAACAAAGCTCCTGTTTCTCAACCTGCCACTAATGAAGTCTATTTAGTTTGGGATGATGAGGCAATGTCCATGGAGGAAAGAAGAATGTCTTTGCCTAAGTATCAGGTGCATGATGAAAATAGCCAGATGAGCTCCATTGATGCAGCCATTGACAAGAGGATACTCGAAAGCAGGCTGGCCGGTCGAATGGCTTTTTGA 1122 0.451 MGKKKKRASIKVWCYYCDREFDDEKILVQHQKAKHFKCHVCHKKFSTTGSMIIHVLQVHKESVTKVPNAKPDRDSIDIEIYGMQGIPPDILDAHYREEEDHVPSKAAKVDFPSTQLVGGVAPASFGIRFPPQPNWGPRPPIYNPAVPVPPTAWAVPPRPQPWYPQPPAVSFAPPAPYVQQPLFPVHNVRPPLPSTTLPELSTLITPGLPASTPSVPVSQPLFPVIGTNYTPTQSSTFPATTLSSNVQSVTPGLLSGVLVNAHSVVNTSSVTNSYQAIGAPGGIASNSHSYSSGPNTGGPSIGPPPVIANKAPVSQPATNEVYLVWDDEAMSMEERRMSLPKYQVHDENSQMSSIDAAIDKRILESRLAGRMAF 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g1098 373 ProSitePatterns Zinc finger C2H2 type domain signature. 38 59 IPR013087 -
Lal6g1098 373 ProSiteProfiles Zinc finger BED-type profile. 7 66 IPR003656 GO:0003677
Lal6g1098 373 MobiDBLite consensus disorder prediction 288 313 - -
Lal6g1098 373 SMART c2h2final6 36 59 IPR013087 -
Lal6g1098 373 SMART c2h2final6 12 35 IPR013087 -
Lal6g1098 373 SUPERFAMILY beta-beta-alpha zinc fingers 12 61 IPR036236 -
Lal6g1098 373 ProSiteProfiles Zinc finger C2H2 type domain profile. 36 64 IPR013087 -
Lal6g1098 373 Gene3D Classic Zinc Finger 11 78 - -
Lal6g1098 373 PANTHER ZINC FINGER PROTEIN 207 1 373 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal6g1098 Lal-Chr6 8120842 8126150 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal6g1098 1 353 C2H2 Transcription Factor Family AT1G30970 59.178 1.14e-129 375
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lal6g1098 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal6g1098 - - gmx:100819009 530.791