Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g1002 ATGTCCTCTTTTTCTTCTTTTTCTTCCTCTCCACCACCCACTACTTACCTTACCAACATTGGCTTTGGCTACTCTATTGCCATTGCCCTTGGCTTCCTCTTCCTTCTTTCCACTCTCATCCTCTCTTCTTACCTTTGTCTCCGCACTATCCGCAATCGTAACCGCAACCGCAATTTAAACGATACCAATAATGACAACAACAATAGTAATAATAATAATAATACTAACTCTGACGGCGTCGTTTTGCCGCGTATTATATTTGTAGCGGAGGATGATGAGGAAAATCAAAACGACGACGTTGTGACGGGGCTTGAACAAAACGTGATTAACTCGTACCCTAGGTTCGAGTACAATAAGGAAGTGGTTCATGGTGTGGGCCATGATGCCACGTGTTCGATCTGTTTGTGTGAGTATAAGGATTCGGAGATGCTGAGGATGATGCCGGAGTGTCGTCACTATTTTCACTTATGCTGTCTTGATTCGTGGTTGAAGCTCAATGGCTCTTGTCCTGTTTGCCGGAACTCGCCGCTTCCGACGCCGGTTTCTACGCCGCTGCAGGAGGTTGTGCCGCTTGCTCAGTACGCCGCTGATAGAAGGGGAAGACGGTGA 609 0.4696 MSSFSSFSSSPPPTTYLTNIGFGYSIAIALGFLFLLSTLILSSYLCLRTIRNRNRNRNLNDTNNDNNNSNNNNNTNSDGVVLPRIIFVAEDDEENQNDDVVTGLEQNVINSYPRFEYNKEVVHGVGHDATCSICLCEYKDSEMLRMMPECRHYFHLCCLDSWLKLNGSCPVCRNSPLPTPVSTPLQEVVPLAQYAADRRGRR 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g1002 202 MobiDBLite consensus disorder prediction 56 77 - -
Lal6g1002 202 SUPERFAMILY RING/U-box 111 178 - -
Lal6g1002 202 Pfam Ring finger domain 130 173 IPR001841 -
Lal6g1002 202 ProSiteProfiles Zinc finger RING-type profile. 131 173 IPR001841 -
Lal6g1002 202 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 88 177 IPR013083 -
Lal6g1002 202 SMART ring_2 131 172 IPR001841 -
Lal6g1002 202 CDD RING-H2_PA-TM-RING 130 173 - -
Lal6g1002 202 PANTHER RING-H2 FINGER PROTEIN ATL67 7 199 IPR044289 GO:0016567|GO:0016740
Lal6g1002 202 PANTHER RING-H2 FINGER PROTEIN ATL67 7 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal6g1002 Lal-Chr6 7144376 7144984 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal6g1002 18 192 C3H Transcription Factor Family AT5G07040 36.000 4.69e-35 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal6g1002 - - vra:106773185 241.506
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal6g1002 6 7144376 7144984 Lal6g1002 6 7144376 7144984 ECH
Lal6g1002 6 7144376 7144984 Lal6g1002 6 7144376 7144984 PCT