Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g1000 ATGGAAAGTCACCAACATTCACCACCACCATTGTTGCTTTCACCACCACCATTGTTGCTTTCACCACCACAATCCTCTCCTCCATTCCTCTTCACTGATCCATCATCCATGTTGCAGAACCCTATGCATGACAATAGCATTGACTGGGTTAATCTTTTCTGTGGCAAAAACAACTTGGTTGAGGATCATACAAAGGGAATGAATATGATGGAGTGTGGTGGTTCTTTGATGGCTGAAAGTTATGGAGCTGTGGATGAAAAGGGGAACAAGGTGGAGAAAAGAAGAGGAGGGAGATTGAAGAAAAAGACTCAACCCAGGTTTGCATTTCAGACTAGAAGTGCTAATGATATTCTTGATGATGGTTATCGTTGGAGAAAATATGGCCAGAAAGCTGTCAAGAACAGCATATATCCCAGAAGCTACTACCGCTGCACGCATCACACATGCAACGTGAAGAAACAGGTGCAAAGGTTATCTAATGACACAAGCATTGTGGTGACGACTTACGATGGAATTCACAATCATCCATGTGAGAAATTGATGCAAACTCTAACTCCTCTTCTGAAGCAAATGCAATTTCTCTCTAGGAATCGACGATTTAAGGAAGTTAATGGATTGACAATTGATAGGGAGTGGATTGAAAACCCAATTAGAGTTAAAAATCACATTAGTTCTCACTTTGAGGCAAAGTATGCAGTGTGCCATAGGAGAAGGCCTTCTATGGATGGGATTGATTTCAAGCACCTTAATGAAGAGGAAAATTAG 765 0.4131 MESHQHSPPPLLLSPPPLLLSPPQSSPPFLFTDPSSMLQNPMHDNSIDWVNLFCGKNNLVEDHTKGMNMMECGGSLMAESYGAVDEKGNKVEKRRGGRLKKKTQPRFAFQTRSANDILDDGYRWRKYGQKAVKNSIYPRSYYRCTHHTCNVKKQVQRLSNDTSIVVTTYDGIHNHPCEKLMQTLTPLLKQMQFLSRNRRFKEVNGLTIDREWIENPIRVKNHISSHFEAKYAVCHRRRPSMDGIDFKHLNEEEN 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g1000 254 Gene3D WRKY domain 103 177 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lal6g1000 254 MobiDBLite consensus disorder prediction 9 27 - -
Lal6g1000 254 Pfam WRKY DNA -binding domain 119 176 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lal6g1000 254 PANTHER WRKY TRANSCRIPTION FACTOR 43-RELATED 39 193 - -
Lal6g1000 254 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 39 193 IPR044810 GO:0003700
Lal6g1000 254 MobiDBLite consensus disorder prediction 1 27 - -
Lal6g1000 254 ProSiteProfiles WRKY domain profile. 113 178 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lal6g1000 254 SUPERFAMILY WRKY DNA-binding domain 111 177 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lal6g1000 254 SMART WRKY_cls 118 177 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal6g1000 Lal-Chr6 7128062 7132441 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal6g1000 84 195 WRKY Transcription Factor Family AT5G41570 65.179 4.19e-52 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Lal6g1000 WRKY 1e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal6g1000 - - gmx:100810669 244.202
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal6g1000 6 7128062 7132441 Lal6g1000 6 7128062 7132441 PCT