Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g0995 ATGGTTGATATCAGCGTCGAATTTTCTGGAACAATTTGTTCCATTTGCTACGAATCTCTCAACCCAATTAACGAAGACCTTCAATCTATATCTATCTGCGGCCACGTCTTCCATGAACTCTGTTTGCAGCAATGGTTTGAGTATTCGAAAGCGAAGAAGCACACTTGCCCTGTTTGCAAGCAGGGTTGCAAAGTCGATGATGCGTGCCGGCTTTACTTTCAATCGATCGGAGAAGGAAATGAAGCTGTTCTTTCAGCTCAGAAACCCTTTGATTTTCAGCAAGATGTTGGGGTTTTGCGCAAAGAAGTGAAGTTGTTGGAGGTTAAAGTTTCAGGGCTTAGTTCTCAATTAAATCGTCAAGGAAAGGAATTACAAGAAGTAACAGATGAGCTCTGTGCTTGCAAGAAGCAAGCAAAGATTGATATAGCATTAAAAAATCAGGCCCTGAATGAAAAAGCAACCTTACAATTTCAGCTTCGTATGAAGTCAGAGGAACTTGAGAAGTCAAGTTTTGAGCATTTTAGATTAGAAGAAAGAAATATGGCTTTGGCTAAAGAACTTGCAGCATTAAAATTAGCTTCTGATTTGGACCTTGATGAAGAGGATGTTGTGAGGCTTGCCACTCTGGGTAATGGGGCCAACAGTAAAGATACAATCGACACATTAAAGAAATCTCTGGTCTTGCGGAACAAGAGTTACAAAGAATTGATGGTCAAGTGCAATCTTCTGGGAAGAGGTGAGGTTCGTTATAGCAAAAAGCTTGTGAAGGCTAAAGAGAAGATCGCTAAACTGAAGGCAAAGGTACAAGAACTGGAGACAGCTGCTGAAGTGAAAGAGAATGAATATCTAATGTCTCGTAAACATAAAGCATCAAAGAAAGCAAAATCTTCAAAGACTCTTAAAAACAGTATCAATTCTAATCCTAATGTATTGGCAGCTAGCGAATATTCATCAAAAGAGAAAATCAAACAAATTTTGACACCCCAATCAGGAAAGGATCTGACTTTGAACAACAACAGTAATTCTGTACAATCTTTGAATATAGAGAACTCAGATGCTGCTAAAAATAAAGCTGCGAATTTTGGTAACGTAAGTGAAACTACCTTGTCTGTTGATAAAGAGAGAGAAGTCATCTCAATTGATGATGATTCAGCATTTACAAAAACCTTACCTGAACATCCAAAACTCAACTGCAAAGAGCAAGACATGGATGATGTTGCTCTTAGAAAACCTACTCTAGCGAAGCCAGAGGCAGCAATGCAAGGAAAATGCAATCTAGCTGAATCTTCAAGAATTGATATTGACATTGAAATTCCCAACACTTGGTCTGGTGTCATGGATGATGACGTGACATTATTATATAATGTTAAACAAGCTGAGCCAATGATTAACATTAGAAAGGAGTCACCATCAACACTTTCAAGTTCAGGGGACATCTGCTTCACTGGTGGATTGCTTGGTCCTGATGGAACTCATCGATACTTGGGTAAATGGTGCAAGCGTGGACAAAACAGTGAACCGGCTTCTGCAAAAGGTTCAGGTAATGGGGATTTGATAGCTGTCGGTGCTGATGGTAGAGGTGGCAGAACTAAAGCTCTAAGGTCTTCAAACCAAACCTTCTCGGATGGTAAGGAAAGCTCATTAAGTTCAAAAAGGTTGAAGTTTGGATCCAAAACAAATAGTGTGCAATCCAAGGGGTGCTTACAGATAGAACACTTCTTTGGGAGAGCCACTCAGTAA 1740 0.3977 MVDISVEFSGTICSICYESLNPINEDLQSISICGHVFHELCLQQWFEYSKAKKHTCPVCKQGCKVDDACRLYFQSIGEGNEAVLSAQKPFDFQQDVGVLRKEVKLLEVKVSGLSSQLNRQGKELQEVTDELCACKKQAKIDIALKNQALNEKATLQFQLRMKSEELEKSSFEHFRLEERNMALAKELAALKLASDLDLDEEDVVRLATLGNGANSKDTIDTLKKSLVLRNKSYKELMVKCNLLGRGEVRYSKKLVKAKEKIAKLKAKVQELETAAEVKENEYLMSRKHKASKKAKSSKTLKNSINSNPNVLAASEYSSKEKIKQILTPQSGKDLTLNNNSNSVQSLNIENSDAAKNKAANFGNVSETTLSVDKEREVISIDDDSAFTKTLPEHPKLNCKEQDMDDVALRKPTLAKPEAAMQGKCNLAESSRIDIDIEIPNTWSGVMDDDVTLLYNVKQAEPMINIRKESPSTLSSSGDICFTGGLLGPDGTHRYLGKWCKRGQNSEPASAKGSGNGDLIAVGADGRGGRTKALRSSNQTFSDGKESSLSSKRLKFGSKTNSVQSKGCLQIEHFFGRATQ 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g0995 579 PANTHER RING ZINC FINGER PROTEIN-RELATED 5 578 - -
Lal6g0995 579 SUPERFAMILY RING/U-box 9 65 - -
Lal6g0995 579 MobiDBLite consensus disorder prediction 504 546 - -
Lal6g0995 579 CDD RING-H2 13 60 - -
Lal6g0995 579 PANTHER RING ZINC FINGER PROTEIN-RELATED 5 578 - -
Lal6g0995 579 MobiDBLite consensus disorder prediction 531 546 - -
Lal6g0995 579 SMART ringv_2 12 60 IPR011016 GO:0008270
Lal6g0995 579 MobiDBLite consensus disorder prediction 286 306 - -
Lal6g0995 579 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 8 171 IPR013083 -
Lal6g0995 579 ProSiteProfiles Zinc finger RING-type profile. 13 60 IPR001841 -
Lal6g0995 579 Pfam Ring finger domain 12 60 IPR001841 -
Lal6g0995 579 Coils Coil 247 281 - -
Lal6g0995 579 SMART ring_2 13 59 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal6g0995 Lal-Chr6 7092132 7097655 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal6g0995 12 579 C3H Transcription Factor Family AT4G01270 40.696 9.62e-114 346
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal6g0995 K11985 - gmx:100812811 717.613
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal6g0995 6 7092132 7097655 Lal6g0995 6 7092132 7097655 ECH
Lal6g0995 6 7092132 7097655 Lal22g0889 22 6954415 6959365 LSH