Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g0991 ATGGTATCCGTGAACCCTAATCCAGCTCAAGGCTTTTACTTCTTCAATCCTTCTAGTATGGCCCTTCCCGGCGTCAATCCTCTCCCTCCGCCACAACCACCTGCTCCGACCGCCGCGGATTCATACACCTCCGCCGCTTCATCTTCTACCGTTAACATGATCGAGGATCTGAGTAAGAAGATTCGGAAACCGTATACTATTACTAAGTCTAGAGAGAGCTGGACTGAGCAGGAACATGAGAAGTTTCTAGAAGCTCTCCAATTATTTGACCGTGACTGGAAAAAGATTGAAGCATTTGTCGGCTCTAAAACAGTTATCCAGATACGTAGTCATGCGCAAAAGTATTTTCTCAAAGTACAGAAAAACGGAACGAGTGAACATGTACCTCCCCCTCGGCCAAAAAGAAAAGCTTCTCACCCATATCCTCAAAAGGCTCCTAAAACCACTCCTACTGCATCCCAAGTCACAGGGTCATTGCAATCTTCAAACGCTTTCGTTGAACCTGCATACATTTATAGCTCAGATTCATCATCTGTGCTTGGAACTCCAGTTATCAATGTGCCTCTATCATCTTGGAATCATAGTGCTATACCACCAGTCAATGTGCCACAAGTGACCAAAGATGACATGGGTTTTACTGGAGTTGGACAAACTGTCCATCTTAATTGTTGCTATAGCAGTAGTAATGAGAGCACCCCTGCGTCTCGGCCAAGTAGCATAGGGATTGATCAAGGCAACCAGGGCAGGCCACCTAAAGTAACGCCAGATTTTGCACAAGTCTACAGATTCATTGGCAGTGTATTTGATCCAGATTCAGCTAATCACCTACAGAGATTGAAACAGATGGACCCAATAAATGTGGAAACGGTATTGTTGTTGATGAGAAACCTCTCCATCAATTTAATGAGTCCTGAATTTGAGGATCATAAGAGGCTGCTTTCGTCATATGGTGCTGACTCCGGAAAGGAGAAGCTTGGTAACCTTTCCAGGAAATCCCTTCCTCATAAATCTAAGGGTGCTATTCTATCTGCTTAA 1035 0.4444 MVSVNPNPAQGFYFFNPSSMALPGVNPLPPPQPPAPTAADSYTSAASSSTVNMIEDLSKKIRKPYTITKSRESWTEQEHEKFLEALQLFDRDWKKIEAFVGSKTVIQIRSHAQKYFLKVQKNGTSEHVPPPRPKRKASHPYPQKAPKTTPTASQVTGSLQSSNAFVEPAYIYSSDSSSVLGTPVINVPLSSWNHSAIPPVNVPQVTKDDMGFTGVGQTVHLNCCYSSSNESTPASRPSSIGIDQGNQGRPPKVTPDFAQVYRFIGSVFDPDSANHLQRLKQMDPINVETVLLLMRNLSINLMSPEFEDHKRLLSSYGADSGKEKLGNLSRKSLPHKSKGAILSA 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g0991 344 CDD SANT 73 116 IPR001005 -
Lal6g0991 344 PANTHER MYB TRANSCRIPTION FACTOR 2 338 - -
Lal6g0991 344 SUPERFAMILY Homeodomain-like 65 121 IPR009057 -
Lal6g0991 344 MobiDBLite consensus disorder prediction 227 251 - -
Lal6g0991 344 MobiDBLite consensus disorder prediction 120 156 - -
Lal6g0991 344 PANTHER SWI/SNF COMPLEX-RELATED 2 338 - -
Lal6g0991 344 Gene3D - 74 121 - -
Lal6g0991 344 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 120 IPR017930 -
Lal6g0991 344 Pfam Myb-like DNA-binding domain 71 116 IPR001005 -
Lal6g0991 344 ProSiteProfiles Myb-like domain profile. 66 116 IPR001005 -
Lal6g0991 344 MobiDBLite consensus disorder prediction 323 344 - -
Lal6g0991 344 SMART sant 70 118 IPR001005 -
Lal6g0991 344 MobiDBLite consensus disorder prediction 227 245 - -
Lal6g0991 344 ProSiteProfiles SANT domain profile. 69 122 IPR017884 -
Lal6g0991 344 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 69 118 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal6g0991 Lal-Chr6 7049453 7054920 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lal6g0991 Myb_DNA-binding 1.5e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal6g0991 - - adu:107472769 493.041
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal6g0991 6 7049453 7054920 Lal6g0991 6 7049453 7054920 ECH
Lal6g0991 6 7049453 7054920 Lal18g0481 18 3979690 3985082 LSH
Lal6g0991 6 7049453 7054920 Lal6g0991 6 7049453 7054920 PCT
Lal6g0991 6 7049453 7054920 Lal18g0481 18 3979690 3985082 PCT
Lal18g0481 18 3979690 3985082 Lal6g0991 6 7049453 7054920 PCT