Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g0981 ATGGGTTTCCCCGTTTGTTACACACAAGTTTTCTTCCCAAACCTCTTCCTCCATTTCCTCATCTTCCTCGGCTTCCTCAGAAACCTCGTTTTCATCATCTTCCACTACCTCGGAATCTCCGACTTACTCGAAACCGACGTCGTTTGGCCCGAACCCAACCGAATTCCCGACACCAAAAAATCTCCATCCCTCTCCGCCATCCTCATCCGCGAACTCCTTCCCGTCATTCAATTCTCTGACCTCGATTCCACCACCGCCGCCGTGACCGCGGCGGAGAGTGGCTGCGCGGTGTGCCTGTATGAATTCTCCGGTGAGGATGAAATAAGGTGTTTAAGGAACTGTAAGCACATTTTCCACAGAGGGTGTGTGGACCGTTGGATTGATCATGATCAGAAGACGTGTCCTCTTTGTAGGACCCCTTTTGTACCTGATGATATGATTGATGATTATAATCAACGGCTTTGGGCTGCTTCTGGTGTTGCTGAGTTCTACGCGGAATACACTTCTTTCTGA 513 0.4971 MGFPVCYTQVFFPNLFLHFLIFLGFLRNLVFIIFHYLGISDLLETDVVWPEPNRIPDTKKSPSLSAILIRELLPVIQFSDLDSTTAAVTAAESGCAVCLYEFSGEDEIRCLRNCKHIFHRGCVDRWIDHDQKTCPLCRTPFVPDDMIDDYNQRLWAASGVAEFYAEYTSF 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g0981 170 PANTHER BRH1 RING FINGER PROTEIN 1 167 - -
Lal6g0981 170 Pfam Ring finger domain 95 138 IPR001841 -
Lal6g0981 170 PANTHER RING ZINC FINGER PROTEIN-RELATED 1 167 - -
Lal6g0981 170 SUPERFAMILY RING/U-box 94 146 - -
Lal6g0981 170 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 71 145 IPR013083 -
Lal6g0981 170 SMART ring_2 95 137 IPR001841 -
Lal6g0981 170 ProSiteProfiles Zinc finger RING-type profile. 95 138 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal6g0981 Lal-Chr6 6960198 6960710 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal6g0981 1 161 C3H Transcription Factor Family AT1G63840 46.667 7.05e-51 159
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal6g0981 K16281 - mnt:21404323 255.758
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal6g0981 6 6960198 6960710 Lal22g0859 22 6567855 6568376 LSH
Lal6g0981 6 6960198 6960710 Lal6g0981 6 6960198 6960710 PCT
Lal6g0981 6 6960198 6960710 Lal22g0859 22 6567855 6568376 PCT
Lal22g0859 22 6567855 6568376 Lal6g0981 6 6960198 6960710 PCT