Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g0977 ATGCAACTCGTTATTATGTTATATGGGACAAAATGTTCGACGATAAAATGTCAACAAGAGATTAAACTCCATGTAACAAAGATGAGAATGACGCGTTGGATGAGTGGACACAATAGACAAGATAGGATTGGAAATGAATATATTAAGGAGAAAATTGGAGTAGCTCATATTGTAGAAAAGATGGTAGAATTCCGCCTTAGATGGTTTGGACATGTGTGGAGGAGACCGGTAGAAGTCCTCATAAGGAAAGTGGATCAAATGGAGGTTAGTCCTCGTAAAGATTTAGAAATTAATGTTTTGTCAATGAACATGATTTATGATAGAGCATTATGGCGTCAAACGTACTGCTGGAAAATGGGAGGTTGTTGTTGTTCGGCCAGAAAACCTCACCTGCCGGGAACACCAGTGTATTACTATTACCCACCATCTTTGGCCGAGCGCGAGTCGTTGAACACTACTGATGGTTCGTCTGCTTCACTCACTGCTGGGTTGCTGGTAGGTTTGGACCTAGAATCATCCACACCAGATACATATCAGTCCCCTCCTGCACCTCTGCCGTATGATACAGTCCTGGGAGTTCCAGCATCAACATACTCTGAAGCAGACAGAGAAACACCCAGCGGTACTAGTTTTGAAACTTCGGTTAGATGCAAGGATCTTGTAGAATCAGAATGCAAAGCTCAAGCCGATTCCGCACCCATGTCTCCGAAGAAACCAGAACTGTCAAAATCAAATGAACCTCATGCATTAGCGACAGAAGAAGAGGATGTCTGTCCAATCTGCCTTGAAGAATATGATGTCGAGAATCCTAAAAATCTGACAAACTGTGATCATCAGTTTCACCTCTCTTGCATTCTCGAGTGGATGGAAAGAAGTGATTCCTGTCCTATATGTGATCAGGATATGATATTTGATGAAATGACACTGAACTAG 933 0.4223 MQLVIMLYGTKCSTIKCQQEIKLHVTKMRMTRWMSGHNRQDRIGNEYIKEKIGVAHIVEKMVEFRLRWFGHVWRRPVEVLIRKVDQMEVSPRKDLEINVLSMNMIYDRALWRQTYCWKMGGCCCSARKPHLPGTPVYYYYPPSLAERESLNTTDGSSASLTAGLLVGLDLESSTPDTYQSPPAPLPYDTVLGVPASTYSEADRETPSGTSFETSVRCKDLVESECKAQADSAPMSPKKPELSKSNEPHALATEEEDVCPICLEEYDVENPKNLTNCDHQFHLSCILEWMERSDSCPICDQDMIFDEMTLN 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g0977 310 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHB1A-RELATED 119 306 - -
Lal6g0977 310 SMART ring_2 258 298 IPR001841 -
Lal6g0977 310 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 235 307 IPR013083 -
Lal6g0977 310 ProSiteProfiles Zinc finger RING-type profile. 258 299 IPR001841 -
Lal6g0977 310 MobiDBLite consensus disorder prediction 227 250 - -
Lal6g0977 310 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 119 306 - -
Lal6g0977 310 Pfam Ring finger domain 257 298 IPR001841 -
Lal6g0977 310 SUPERFAMILY RING/U-box 252 305 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal6g0977 Lal-Chr6 6945449 6951560 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal6g0977 119 306 C3H Transcription Factor Family AT4G00335 55.319 5.63e-69 211
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal6g0977 - - gmx:100804435 315.464
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal6g0977 6 6945449 6951560 Lal6g0977 6 6945449 6951560 PCT