Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g0972 ATGGCAGGGGATGGTGACGGTGTTCTTGTAGAAAGCGGTGGTGGTCGTAGTGTGGTTAAAGCTTCGTACTACGAGATTCGGCGTCGTTTTGAGGGGTTACTTTGCAAGTTGTGGAGTGAGATCTGTGTTCGTTCTCTACCGGTTCCGCCTATGCTTGGTAATGGTTGTAAAGTTGATTTGTATAAGCTGTTCTTGGTGGTGAGGGGGGAAGGCGGCTACAATGTCGTTTGTCAGAGTAAGCTTTGGGATTCGGTTGCGGAGGAGTGTGGGTTGGGTTTGAGTGTGGGTTCGGCGGTGAAATTGGTTTACAGTAAGTATTTGAGTGCGTTGGATGCGTGGTCGAAGAAGGTTGCTGATAGTAAGGTGGCTGAGTGTAGGTTGGTGGATGGTAGGTATAAGTTCCAGAAGCGGTTGATGGAGTTTCAGGATGAGGTTAAAGGGTTGTTGTTGGATTATGCGGAGAATGAGGGTGTGGGCGAGTCGAAGGGTGGTGGGAAGTTGTGTGTGAAGAAAGGAGTTCGTAATGGAGGGAATAGTAGCACGGAGATAATGGACTCTGTGATGAATGACTATGTTCATGGAAACTTCAGTAATGATGGCATGAAAGTGATCAGAGAGGTTGTTGATGGAGGGAAAGTGTCTGTGAAACTGGGGTTGGAGGTTGATTTGTCGGATGCCGAGAATAGTGGTTATAGCGTGGTGGGATTGGTGAGTGGAGGTGAGAAGAGTGACAGCAATGATGATGGTGGATTGGATTTGGATGCATCTGGTGTTGGGATCAGCTCTGGTCGTAAGAGGAAGAGAGAGTCTATGTCGGGTTTGCTTAGATGGGTGTCCACCGTTGCTAAGAATCCTGCCGATCCTGCTGTTGGCTCATTGCCTGATAAACTGAAATGGAAGTCTTCAAGCAATCATGAGGTCTGGAAGCAGGTTTTGTCCTTTCGGGAGGCTGTATTTTTCAAAAGAAGTTTTGATTCAAGCATTGAACAACAAAATTGGCAGGGTTTGGCTGTGAGGACAACCGGAAATCTGATTCAAGCTGCTTCAGTTTTGCAACTTGAAAATCAGATTTGGCACTTTGAAAATCAAAGGATGAACCCTTCCATGTATGATGATAATAGTGGGGGAAGTTACAACCTTAGAGAGAGGTTGCGACATGACAAGATGCATTTATTGGCAAAAGGTACAGCAGCTGCACGAAGCTCCTCAAATTCATCTACAGGGAGCAGAGATTTGGACCGAACACCAAGTCCTCATCCTAGAGATCGTGCTGAGAAGCAGGTGGTCGATTCTAGCATTGATGGATGTCCCGAAGTGCGTGTACCCGTCGGTCCAAATCACCAAGCTGAAGTACCAAAGTGGACAGGCTTAACTCCTAAAAGTGATTCTAAGTGGTTGGGGACCCAAATATGGCCATCACAAAAAGGAAATTCAAGACATCTTATTGAAAGGGACCCCATAGGAAAGGGAAGACAAGATTCCTGTGGTTGCTCAGTTGCAGGTTCTGTTGAGTGTGTAAGGTTCCACATTGGTGAGAAAAGGGGGAAAGTTAAGCTGGAATTAGGTGCCGCTTTTTATCTGTGGAATTCTGATAAGATAGGTGAAGAAGTTAGGCACTTGTGGACAAATGAAGAAGAGAAGAGATTCAAGGATGTGGTGGGGCCAAACCCTCTGCCAGTGGGATATTATTTTTGGGATCATATTTTTAGATCCTTTCCTAAAAAGAGCAGGGAAGATTTAGTTTGCTACTACTTCAATGTCTTTCTTTTGCAGCGGAGAGCATATCAGAACAGGCACACTCCTGAGGATATTGATAGTGATGACGATGAAGCTGAAGATGGACTGAGGAATGTTTTTGGATATCGGACACAGATATCACGCTGTTCCATCTTAACCCTAAAAAGGCAGCAAAAAAGAAGAAAAAATAGCAAGTGA 1935 0.4532 MAGDGDGVLVESGGGRSVVKASYYEIRRRFEGLLCKLWSEICVRSLPVPPMLGNGCKVDLYKLFLVVRGEGGYNVVCQSKLWDSVAEECGLGLSVGSAVKLVYSKYLSALDAWSKKVADSKVAECRLVDGRYKFQKRLMEFQDEVKGLLLDYAENEGVGESKGGGKLCVKKGVRNGGNSSTEIMDSVMNDYVHGNFSNDGMKVIREVVDGGKVSVKLGLEVDLSDAENSGYSVVGLVSGGEKSDSNDDGGLDLDASGVGISSGRKRKRESMSGLLRWVSTVAKNPADPAVGSLPDKLKWKSSSNHEVWKQVLSFREAVFFKRSFDSSIEQQNWQGLAVRTTGNLIQAASVLQLENQIWHFENQRMNPSMYDDNSGGSYNLRERLRHDKMHLLAKGTAAARSSSNSSTGSRDLDRTPSPHPRDRAEKQVVDSSIDGCPEVRVPVGPNHQAEVPKWTGLTPKSDSKWLGTQIWPSQKGNSRHLIERDPIGKGRQDSCGCSVAGSVECVRFHIGEKRGKVKLELGAAFYLWNSDKIGEEVRHLWTNEEEKRFKDVVGPNPLPVGYYFWDHIFRSFPKKSREDLVCYYFNVFLLQRRAYQNRHTPEDIDSDDDEAEDGLRNVFGYRTQISRCSILTLKRQQKRRKNSK 644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g0972 644 CDD ARID 27 111 - -
Lal6g0972 644 SUPERFAMILY ARID-like 30 119 IPR036431 GO:0003677
Lal6g0972 644 SMART ELM2_2 441 492 IPR000949 -
Lal6g0972 644 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2 47 639 - -
Lal6g0972 644 Pfam ARID/BRIGHT DNA binding domain 47 109 IPR001606 GO:0003677
Lal6g0972 644 MobiDBLite consensus disorder prediction 397 413 - -
Lal6g0972 644 ProSiteProfiles ARID domain profile. 24 115 IPR001606 GO:0003677
Lal6g0972 644 MobiDBLite consensus disorder prediction 414 429 - -
Lal6g0972 644 SMART ARID_2 21 111 - -
Lal6g0972 644 Gene3D - 18 124 IPR036431 GO:0003677
Lal6g0972 644 SMART bright_3 25 116 IPR001606 GO:0003677
Lal6g0972 644 MobiDBLite consensus disorder prediction 395 458 - -
Lal6g0972 644 CDD SANT 541 588 IPR001005 -
Lal6g0972 644 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 1 47 639 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal6g0972 Lal-Chr6 6904322 6909658 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Lal6g0972 ARID 1.3e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal6g0972 - - lang:109339911 848.195
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal6g0972 6 6904322 6909658 Lal22g0852 22 6483072 6488418 LSH
Lal6g0972 6 6904322 6909658 Lal6g0972 6 6904322 6909658 PCT
Lal6g0972 6 6904322 6909658 Lal22g0852 22 6483072 6488418 PCT
Lal22g0852 22 6483072 6488418 Lal6g0972 6 6904322 6909658 PCT