Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g0964 ATGGTGAGTCCTATGCCTGCAACTATGCAACGAATCAGGTCTTCACGGTCGATTCACGATATCCGGGTTCCTGGAGTCATGTCTAGTATCACAGAAATTGTAGAGGAGCCTACTCCAAATGTGGTTGATGATACAATCTATGTTGCTGTGGCAAAAAATGTGAAAGATAGCCAGTTAAATCTGATATGGGCAATACGTAACTCTAAAGGAAAAAAGATTTGTATCCTTCATGTTCATGTGCCAGCAGCTATGATCCCCTTTATGGGAGCAAAGTTTCCACCAAGTTCATTGAAAGAGCAGGAAGTTCGAGCATATTGGGAATTTGAAAGGCAAAGCATGCATAAGACCCTGGATGAATATCTCCATATTTGTCAACGGATGGGGGTTTGTGCAGAGAAAGTGCATATTGAAATGGATTGCATTGAAAAGGGAATTATAGAACTCATCTCTCAGTATAACATTCAGGAGCTTGTTATGGGAGCAGCATCTAATAAGTACCATTCTAGGAGAATGACGGGCCTCAGATCTAAGAAAGCCATCTATGTAAATGAACAAGCTCCAACTTCTTGTCATATACAGTTTACCTGCAAAGGATTCCTTATCCATACAAGGAACCGCAGTTTGGGTGGAGATAATGTAGAGGTGACATCTCCTTCAGTGCAGCAGATGACAACCTCTGAAGCCGAGCATTCGCCTCACTTGAGATCTCAATCTATCAAGCTGGGTCATAATCACTTTGTAAATCAGACTAATCCAAATGAAGAATTAATTCGTAGAGTGAGATCTTCCAATGATGGACATGGAAGGAGAATTGTGCCCTTCTCTTCTCCAGTATGGTTTTCAACTCCACAGAACAGGTTGAGCAGAGAAGCAACTTCTGATGAGTTGGATGAACAGCCAAGACGGAGCCCTTCAGTTTTCTCAACATGCTCTGACTATTGTTCAGTTGAAACAGAATGTAGTCCTTCAAATTTGATTACTGAGGGCAGTGAGAATGTGTTAGCGTTGACCTTGAGTAACTTGTCTTGGAATCTTCGCCATCCATCACCTCATAGTGTACTGGATGGAGGAATGGATGATACTCTCTATGATAAACTTGATCAGGCTATGGCTGAGGCTGAGAATGCTAGGCGGGATGAGTATCATGAGATTGTTAGGCGTGGGAAAGCTGAAAAAGAGGCCATTGATGCTATACGCAGGACTAAAACCGCTGAAATCTTGTATAAGGAAGAGCTGAAACTGAGGAAAGAGTTAGAGGAAGCACTAGTAAGGGAAAGAGAAGAACTTGATAACATGAAGAGCCAGAGAGACAAAGTTAAGGAAGAACTCCAACTTGGCCTGGATCAGGAGTCATCACTCGAGAGTCAAATTGCATCAACTGAACTTATGATGAAGGAGTTGGAGGAGAAGATTATATCAGCTGTGAGTTTGTTACATACCTACAAGAACGAACGAGATGATTTACAAATGCAACGTGATAATGCATTGAGAGAGGCAGAGGAGTTGAGGAAAAAACAAGGAGAGTCGTCAAGTACACAATCGCTACAATTCTTGTCAGAAATTTCTTTTCTAGAGATTGAAGAAGCGACTAATAACTTCAATCCAGCCCTGAAGATCGGAGAAGGTGGATATGGAAGTATATTTAAGGGCATCATGCGTCACAAGGAGGTAGCTATAAAAATGTTGCGCCCAGACAGCATGCAAGGACCCTCAGAGTTCCAACAGGAGGTTGATGTATTGAGCAAGATAAGGCATCCCAATCTTATCACACTTATAGGTGCTTGCCCAGAAACATGGACGCTTGTCTATGAGTATTTACCCAATGGAAGCCTTGAAGATCGTCTCTGCTGCAAGGATAATTCACCTCCATTATCATGGCAATGTCGTATTCGTATTGCTGCAGAACTGTGTTCTGCTCTCATCTTTCTCCACTCCTGTAAACCTCACAGCATAGTGCATGGTGACTTGAAACCCTCTAACATTCTCCTTGATGCTAACCTTGTTAGCAAGCTTAGCGACTTCGGAATGTGTCGTATATTATCTTGTCAGGAGAATTCTATTGACAATACTACAGAGTTTTGGAAAACTGATCCAAAGGGAACTTTTGCCTACATGGATCCCGAATTCCTTGCTTCAGGGGAACTTACTCCAAAGTCTGATGTTTATTCATTTGGAATCATATTGTTGAGAATGTTGACTGGGAGATCAGCCTTTGGAATAGCAAAGGAAGTAAAATATGCATTAGATACTGGAAACTTGAAATCCCTCTTGGATCCTTTAGCCGGAGACTGGCCATTTGTGCAAGCCGAACAATTAACTCACTTGGCTTTGAGGTGCTGCGAGATGAATCGGAAGAGCCGGCCAGACCTTTATTCCGATGTCTGGAGGATGCTGGAATCAATGAGGGCTTCTTCTAGAGGCACAAACACTTCTAGACTAGGTTCTCAAGGACTCAACCAACCTCCTCCATGTTTTGTTTGTCCAATCTTCCAGGAAGTGATGTACAATCCACATATTGCTGCAGATGGTTTTACTTATGAAGCTGAGGCTATCATAGGATGGCTAGACAGTGGTCTTGATACTTCACCAATGACAAATTCTAAGCTTCCACACTCCAATCTCGTTCCCAACCGCGCTCTTCGCTCGGCGATTGAGGAATGGCTTCAAAGTCAGTGA 2676 0.4268 MVSPMPATMQRIRSSRSIHDIRVPGVMSSITEIVEEPTPNVVDDTIYVAVAKNVKDSQLNLIWAIRNSKGKKICILHVHVPAAMIPFMGAKFPPSSLKEQEVRAYWEFERQSMHKTLDEYLHICQRMGVCAEKVHIEMDCIEKGIIELISQYNIQELVMGAASNKYHSRRMTGLRSKKAIYVNEQAPTSCHIQFTCKGFLIHTRNRSLGGDNVEVTSPSVQQMTTSEAEHSPHLRSQSIKLGHNHFVNQTNPNEELIRRVRSSNDGHGRRIVPFSSPVWFSTPQNRLSREATSDELDEQPRRSPSVFSTCSDYCSVETECSPSNLITEGSENVLALTLSNLSWNLRHPSPHSVLDGGMDDTLYDKLDQAMAEAENARRDEYHEIVRRGKAEKEAIDAIRRTKTAEILYKEELKLRKELEEALVREREELDNMKSQRDKVKEELQLGLDQESSLESQIASTELMMKELEEKIISAVSLLHTYKNERDDLQMQRDNALREAEELRKKQGESSSTQSLQFLSEISFLEIEEATNNFNPALKIGEGGYGSIFKGIMRHKEVAIKMLRPDSMQGPSEFQQEVDVLSKIRHPNLITLIGACPETWTLVYEYLPNGSLEDRLCCKDNSPPLSWQCRIRIAAELCSALIFLHSCKPHSIVHGDLKPSNILLDANLVSKLSDFGMCRILSCQENSIDNTTEFWKTDPKGTFAYMDPEFLASGELTPKSDVYSFGIILLRMLTGRSAFGIAKEVKYALDTGNLKSLLDPLAGDWPFVQAEQLTHLALRCCEMNRKSRPDLYSDVWRMLESMRASSRGTNTSRLGSQGLNQPPPCFVCPIFQEVMYNPHIAADGFTYEAEAIIGWLDSGLDTSPMTNSKLPHSNLVPNRALRSAIEEWLQSQ 891
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g0964 891 Gene3D Phosphorylase Kinase; domain 1 502 605 - -
Lal6g0964 891 CDD RING-Ubox_WDSUB1_like 825 866 - -
Lal6g0964 891 MobiDBLite consensus disorder prediction 285 304 - -
Lal6g0964 891 ProSitePatterns Protein kinases ATP-binding region signature. 539 560 IPR017441 GO:0005524
Lal6g0964 891 SMART Ubox_2 824 887 IPR003613 GO:0004842|GO:0016567
Lal6g0964 891 Gene3D Transferase(Phosphotransferase) domain 1 606 816 - -
Lal6g0964 891 ProSiteProfiles Protein kinase domain profile. 533 801 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal6g0964 891 CDD STK_N 45 198 - -
Lal6g0964 891 SMART serkin_6 533 798 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal6g0964 891 Coils Coil 408 505 - -
Lal6g0964 891 PANTHER OS02G0152300 PROTEIN 17 890 - -
Lal6g0964 891 SUPERFAMILY Protein kinase-like (PK-like) 508 801 IPR011009 -
Lal6g0964 891 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 820 891 IPR013083 -
Lal6g0964 891 Pfam Protein kinase domain 538 789 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal6g0964 891 Coils Coil 363 383 - -
Lal6g0964 891 ProSitePatterns Serine/Threonine protein kinases active-site signature. 651 663 IPR008271 GO:0004672|GO:0006468
Lal6g0964 891 ProSiteProfiles U-box domain profile. 820 891 IPR003613 GO:0004842|GO:0016567
Lal6g0964 891 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 56 173 - -
Lal6g0964 891 Pfam U-box domain 822 890 IPR003613 GO:0004842|GO:0016567
Lal6g0964 891 SUPERFAMILY RING/U-box 818 889 - -
Lal6g0964 891 PANTHER U-BOX KINASE FAMILY PROTEIN 17 890 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal6g0964 Lal-Chr6 6804571 6810148 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal6g0964 269 889 U-box Gene Family AT2G45910 54.351 0.0 685
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Lal6g0964 Pkinase 1.7e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal6g0964 - - gmx:100807515 1198.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal6g0964 6 6804571 6810148 Lal6g0964 6 6804571 6810148 ECH
Lal9g1423 9 16111678 16119192 Lal6g0964 6 6804571 6810148 LSH
Lal6g0964 6 6804571 6810148 Lal22g0842 22 6339758 6346038 LSH