Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g0957 ATGACAACTTTAGAGTGTGAGAGTCCAAAACATGAGAAAATGCAGAAGAGCCTAAGTACACAGTTAGCTGTTGCTATAAGGAGTATTCAATGGAGCTATGGGATTTTCTGGGCATCTTCAACCACCCAAGAAGGAATACTGGAATGGAGGGATGGATACTACAATGGAGACATTAAGACAAGGAAAACAGTTCAAACCATGATTGAAAGTAATGCTGATCAAATAAGATTGCAGAGGAGTGAACAACTGAAAGAACTATACAAGTTTATTCTTATAGGTGAATCTGATTCACAAACTAAAAGGCCTTATGCTTCTTTATCACCAGAGGATCTCTCTGATTCTGAGTGGTATTACTTGGTTTGCATGTCTTATGTATTCAATTCCAAACAAAGTTTACCTGGAAAAGCACTAGAAAGTGGTGAAACAATTTGGTTATGCAATGCTCAACATGCAGATAATAATGTTTTCTCTCGTTCTTTGCTAGCAAAGACTGTGGTATGTTTTCCCTATCTAGGAGGCGTTATTGAGATAGGAACAACTGAACTGCTGCAAGATGATCCTAATCTCATTCAACATGTCAAGGCTTGTTTCTTAGAAATCTCAAAGCCTATATGTTCTGATAAATGTTCTTCTGACCTTAATAAACCAGAAGGTGATGATAAATATCCAACATACACCAATGGTGATAAGGGTATATTAGATATAGTGGCATTAGAAAACTCAGGTTCCTTTTCTGAAGAAACCAAATTTGATGAAGATATTGTCAATGAACTGCAAGAAGATTATATAAATGAAGACTCTATCACAGATTCTCCTGATGGGTTTTCCAATGGTTGTGAGAACCATTTTTGGTTGGAGGAATCCATGGCTGAAGGAAGAATCTATGATGGGCCTTCTCAAGTTCATCTTATTGATTATGACTTAAGCAATGATTCACTAGATTCCCTGAGTTCTTGTGATTGTATGCCAAAAGCTTCTGAGAACCGAGGCATAGTTTCTAAAAATGTGAGCCAAATTCATCTAATGGAACTTGAAAGCAATGCTTCTGATGAAGACTTGTACTACACAAGAACTCTTTGTTCTGTTTTAGGAAATTCATCACATTTAACACAACCTAGTATCTCTAATTGTGAATCAAGTTTTGTGAAATGGAAGAAAGGAGTGATTTCTGAAAGGAAAAAGCCAAGGTTGGACCAAAGCATGTTAAAGAAGACTTTGTTTGTTTCTCCTTTTATGCATGGAAGTTTCTCCTCTCTCAACTCACAAAAAGAAAATGTCTCCTCTTATAAAAATAGAGAAAATACAAACTTTCAAGTTCTTAAGTCTGTGGTCCCTTCCTCTACAAGTAAGGTGGACAAGATTTCAATCCTTGGAGAAACAATCAAATACTTAAAACAACTTGAGGCAAGAGTGAAAGAACTTGATTCTTACATGGACATTGTAGATTCTGCAGCAAAAACCAAAAGAAAATGCCCAGATGTGCTAGAGCAGATATCAGATAACTATGGTGCCAGAAAGATTTACAAGGTAATGAAACCTTTGTGTGTTACTGATGAGACAGACACAGAGATAGAAAGAGTTATCAATGATGAAGCTAAGCCAATGAATGTGAAAGTTGACATGAAAGATGAGGATGTTCTTATTGAGATGAAATGTATTTATAGAGAATACTTAATGCATGATATCATGGATGCCTTAAACAATCTCTATTTAGATTCTCACACAGTTGAATCATCAACAATTGATGGTGTTCTCACATTGGCACTTAAAGCTAAGTTTCGCGGAGCAGCAACAGCACCACCAAGGATGATCAAAGAAGCACTTTGGAAAGTGTCTGGAAATATTTGA 1848 0.3631 MTTLECESPKHEKMQKSLSTQLAVAIRSIQWSYGIFWASSTTQEGILEWRDGYYNGDIKTRKTVQTMIESNADQIRLQRSEQLKELYKFILIGESDSQTKRPYASLSPEDLSDSEWYYLVCMSYVFNSKQSLPGKALESGETIWLCNAQHADNNVFSRSLLAKTVVCFPYLGGVIEIGTTELLQDDPNLIQHVKACFLEISKPICSDKCSSDLNKPEGDDKYPTYTNGDKGILDIVALENSGSFSEETKFDEDIVNELQEDYINEDSITDSPDGFSNGCENHFWLEESMAEGRIYDGPSQVHLIDYDLSNDSLDSLSSCDCMPKASENRGIVSKNVSQIHLMELESNASDEDLYYTRTLCSVLGNSSHLTQPSISNCESSFVKWKKGVISERKKPRLDQSMLKKTLFVSPFMHGSFSSLNSQKENVSSYKNRENTNFQVLKSVVPSSTSKVDKISILGETIKYLKQLEARVKELDSYMDIVDSAAKTKRKCPDVLEQISDNYGARKIYKVMKPLCVTDETDTEIERVINDEAKPMNVKVDMKDEDVLIEMKCIYREYLMHDIMDALNNLYLDSHTVESSTIDGVLTLALKAKFRGAATAPPRMIKEALWKVSGNI 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g0957 615 Gene3D - 428 499 IPR036638 GO:0046983
Lal6g0957 615 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 430 479 IPR036638 GO:0046983
Lal6g0957 615 PANTHER TRANSCRIPTION FACTOR MYC1 10 613 - -
Lal6g0957 615 PANTHER TRANSCRIPTION FACTOR TT8 10 613 - -
Lal6g0957 615 SMART finulus 426 473 IPR011598 GO:0046983
Lal6g0957 615 Pfam Helix-loop-helix DNA-binding domain 433 468 IPR011598 GO:0046983
Lal6g0957 615 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 18 197 IPR025610 -
Lal6g0957 615 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 417 467 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal6g0957 Lal-Chr6 6660544 6665409 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal6g0957 16 612 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G41315 38.496 5.15e-116 358
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lal6g0957 bHLH-MYC_N 1.6e-43 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal6g0957 - - lang:109341268 860.907
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal6g0957 6 6660544 6665409 Lal6g0957 6 6660544 6665409 ECH
Lal6g0957 6 6660544 6665409 Lal22g0835 22 6261452 6263597 LSH