LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lal6g0949	ATGGATCGAGGGGATCAAATGGCGTTATCCGGCTCTGCATCTTACTATATGCAGAGAGGGATACCTGGTTCTGGAACACAACCAGATTTACATAATTCACATAATCTTCGCCCCATGTCGAATCCCAATTTACCATTTCAATCAAACATTGGGGGTGGTACTATAGGATCCACATTGCCAATGGAGTCTACAGGAATTTTATCTCAGTCGGTCAATGTCGTTGCTCATTCTGGGGCTCCAATTAGGGAGCGCATCAAAAGGAAGAGAGGAAGGCCTAGGAAATATGGAACTGATGGAACTGTGTCACTGACATTGACTCCAAGTCCAATAACACCGGCTAGTCATCCTGGAACCTTGACACAAACACAAGGCCAAAAACGCGGTCGAGGGCGTCCACCTGGGTCAGGGAAGAAGCAGCAGCTGGCTTCTCTTGGTGAATTGATGTCTGGTTCAGCTGGAATGGGTTTCACACCTCATATCGTCACCGTTGGAGTTGGAGAAGACATTGCAACAAAAATTATGGCATTTTCTCAGCAGGGCCCTAGAGCTATATGCATTTTGTCAGCCACTGGTGCTGTCTCTACGGTGACACTTCGTCAGCCTTCAACTTCCGGTGGCACTGTCACATATGAGGGGTGTTTCGAGATATTGTGTCTATCAGGCTCTTACTTGCTTACCGATGGTGGTGGCTCCCGCAATCGAACTGGTGGACTAAGTGTTTCCCTTGCCGGTCCTGATGGTTGTGTCATTGGTGGAGGAATCGGCGGAGTGCTTATTGCTTCAAGTCAAGTTCAGGTGATAACTGGGAGCTTTATTTGTGGTGGATTAAAGGCGACGAAAATGAGAAAGGAAGCTTCAGAAGTTGCTATGGTATCAGATCATGAGGCTGTTCATAATCCGGTCGCGGTGAATAGCATGTCCTCAAATCAAAATTTTACTCCATCCTCATCTCTAAGAACCTGGCCTGCATCGCGCCCATTGGATACGCACAATTCGCATATTGACATCGATTTAATGCGTGGAGCGATTCTGATGGAAGAGGAGAGGTTGAGGGTTAAGTCTGAAACTTTTGGGTATCAGAGTTTACCAATGTTGGCGAAGATTTCAAGCTGGTTAGTTGATTTTTGGATAAGCTGGGATGGGTTTCAAAACTCATTTAGTCACTGTTGCAATTGGGGAGAGAAAATTATCTCTTTTTCTCAGCAGAGCCCTAGAGGCACAGCTATTTGTATTTTGACAGCCAACGGTGCTGTGTCGACTGTCACGGTTCGTCAACCTTCAACTGCAGGTGGTACTGCCATATATGAGGGGAATTTCCAGATCACGAGCCTGAAAGGCTCATACTTGCCTACTGAGAGTGGTGCCTCCCAAAATGGTGGGCTAAGTATTTTGTTTTCTTCTCCGGATGGCAGTGCCATCGGTGGAGTAGTTAGCGGTGTGCTCATTGCTGCCAGCGAAGTTCAGGTTATTATCGGGAGCTTCGAATATGGAGGATCAAAGACAAAGAGAAGGAAGATATAG	1521	0.4668	MDRGDQMALSGSASYYMQRGIPGSGTQPDLHNSHNLRPMSNPNLPFQSNIGGGTIGSTLPMESTGILSQSVNVVAHSGAPIRERIKRKRGRPRKYGTDGTVSLTLTPSPITPASHPGTLTQTQGQKRGRGRPPGSGKKQQLASLGELMSGSAGMGFTPHIVTVGVGEDIATKIMAFSQQGPRAICILSATGAVSTVTLRQPSTSGGTVTYEGCFEILCLSGSYLLTDGGGSRNRTGGLSVSLAGPDGCVIGGGIGGVLIASSQVQVITGSFICGGLKATKMRKEASEVAMVSDHEAVHNPVAVNSMSSNQNFTPSSSLRTWPASRPLDTHNSHIDIDLMRGAILMEEERLRVKSETFGYQSLPMLAKISSWLVDFWISWDGFQNSFSHCCNWGEKIISFSQQSPRGTAICILTANGAVSTVTVRQPSTAGGTAIYEGNFQITSLKGSYLPTESGASQNGGLSILFSSPDGSAIGGVVSGVLIAASEVQVIIGSFEYGGSKTKRRKI	506

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lal6g0949	506	ProSiteProfiles	PPC domain profile profile.	375	506	IPR005175	-
	Lal6g0949	506	Pfam	Plants and Prokaryotes Conserved (PCC) domain	392	495	IPR005175	-
	Lal6g0949	506	Pfam	Plants and Prokaryotes Conserved (PCC) domain	158	271	IPR005175	-
	Lal6g0949	506	PANTHER	AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9	394	504	IPR039605	GO:0003680
	Lal6g0949	506	PANTHER	AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9	33	316	IPR039605	GO:0003680
	Lal6g0949	506	SMART	AT_hook_2	126	138	IPR017956	GO:0003677
	Lal6g0949	506	SMART	AT_hook_2	86	98	IPR017956	GO:0003677
	Lal6g0949	506	MobiDBLite	consensus disorder prediction	82	141	-	-
	Lal6g0949	506	PANTHER	AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9	33	316	-	-
	Lal6g0949	506	PANTHER	AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9	394	504	-	-
	Lal6g0949	506	CDD	DUF296	394	494	IPR005175	-
	Lal6g0949	506	SUPERFAMILY	AF0104/ALDC/Ptd012-like	156	272	-	-
	Lal6g0949	506	CDD	DUF296	157	246	IPR005175	-
	Lal6g0949	506	MobiDBLite	consensus disorder prediction	16	57	-	-
	Lal6g0949	506	ProSiteProfiles	PPC domain profile profile.	152	294	IPR005175	-
	Lal6g0949	506	SUPERFAMILY	AF0104/ALDC/Ptd012-like	392	495	-	-
	Lal6g0949	506	MobiDBLite	consensus disorder prediction	99	128	-	-
	Lal6g0949	506	Gene3D	-	158	294	-	-
	Lal6g0949	506	Gene3D	-	391	505	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lal6g0949	Lal-Chr6	6605483	6616587	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lal6g0949	395	505	AT-hook Motif Nuclear Localized (AHL) Family	AT3G61310	53.097	4.42e-22	95.9

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lal6g0949	-		-	gmx:100799791	475.707

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lal6g0949	6	6605483	6616587	Lal6g0949	6	6605483	6616587	ECH
	Lal6g0949	6	6605483	6616587	Lal22g0824	22	6157946	6164084	LSH
	Lal6g0949	6	6605483	6616587	Lal18g0502	18	4141632	4143716	LSH
	Lal6g0949	6	6605483	6616587	Lal6g0949	6	6605483	6616587	PCT
	Lal6g0949	6	6605483	6616587	Lal22g0824	22	6157946	6164084	PCT
	Lal6g0949	6	6605483	6616587	Lal18g0502	18	4141632	4143716	PCT
	Lal22g0824	22	6157946	6164084	Lal6g0949	6	6605483	6616587	PCT
	Lal18g0502	18	4141632	4143716	Lal6g0949	6	6605483	6616587	PCT