Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g0944 ATGAATAACAGTAACAACAACAACAACAGAGCCAGATATCCGCCCGGTATCGGCTACGGACGCGGTGGTAGTGGTGGTGGTGGTGGAGGAGGGTTCAACCCTAACCATAACCAAAACGCACCGTTTCAACCAAGGCCCTCTTATCAACAACAACAACAACAACAACAACAACAACAGCACCAGCAACACTATGTGCAGAGGAATTTGGTTCCGCAACAACATCAACAACAGCAGCAGCAGCAACAATGGCTGAGAAGGGCGCAATTGGGTGCTGGTGGTTCTGACTCGAACGTCGTTTACGAGGTCGAAAAGACTGTTCAGACTGAAGCCAATGATTCAAGTTCACAAGATTGGAAGGCAAGACTAAAGGCTCCACCACCTGATACACGCTATAAGACAGAGGATGTGACAGCAACTAAAGGAAATGAATTTGAGGATTACTTTTTGAAGCGAGAGCTGCTCATGGGAATATATGAGAAGGGTTTTGAAAGGCCTTCTCCTATCCAAGAAGAAAGTATTCCGATTGCTCTTACTGGTAGTGACATTCTTGCTAGAGCAAAAAACGGAACAGGCAAAACAGCCGCATTTTGCATTCCTGCATTGGAAAAAATTGACCAGGATACTAATGTTATTCAAGCTGTTATACTGGTCCCTACTAGAGAATTGGCTTTGCAAACATCTCAAGTGTGCAAAGAGCTTGGAAAGCATTTGAATATTGAAGTTATGGTCACAACAGGTGGTACCAGCTTGAAAGATGATATTATGCGCTTATATCAACCAGTCCATTTACTAGTTGGAACTCCAGGAAGAATATTAGATCTCGCTAAGAAGGGTGTTTGTATTCTGAAAGATTGCACTATGCTTGTTATGGATGAGGCTGATAAACTTTTGTCCCCGGAGTTCCAACCTTCTATACAGCAGCTGATTCAATTTCTTCCTTCAAACCGTCAAATTCTAATGTTTTCAGCAACATTTCCTGTCACTGTAAAGGACTTCAAAGATAGATATCTTCAAAAACCATATGTCATTAACCTTATGGATGAGCTAACTCTGAAGGGTATTACACAATTCTATGCATTTGTGGAAGAGAGGCAGAAAGTCCATTGCCTGAATACACTATTTTCTAAGTTGCAAATAAACCAGTCGATCATCTTCTGCAATTCAGTGAATCGGGTTGAACTCCTTGCCAAGAAAATCACAGAACTTGGTTATTCGTGTTTCTATATTCATGCAAAGATGTTGCAAGATCACCGTAATAGAGTATTTCATGATTTCCGTAATGGTGCATGCCGAAATCTTGTCTGTACTGATCTTTTTACTAGGGGAATAGACATCCAAGCAGTGAATGTTGTTATTAATTTTGACTTTCCCAAGAACTCGGAAACTTATTTGCACAGGGTTGGCCGTTCAGGGAGGTTTGGGCATCTTGGTTTAGCAGTGAACCTGATCACTTATGAGGATCGCTTTAACTTATATAGGATTGAACAAGAACTTGGCACTGAAATAAAGCAAATTCCACCATTCATTGATCAGGCTGTTTATTGCCGGTGA 1551 0.4139 MNNSNNNNNRARYPPGIGYGRGGSGGGGGGGFNPNHNQNAPFQPRPSYQQQQQQQQQQQHQQHYVQRNLVPQQHQQQQQQQQWLRRAQLGAGGSDSNVVYEVEKTVQTEANDSSSQDWKARLKAPPPDTRYKTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDTNVIQAVILVPTRELALQTSQVCKELGKHLNIEVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLAKKGVCILKDCTMLVMDEADKLLSPEFQPSIQQLIQFLPSNRQILMFSATFPVTVKDFKDRYLQKPYVINLMDELTLKGITQFYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPFIDQAVYCR 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g0944 516 CDD SF2_C_DEAD 354 483 - -
Lal6g0944 516 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 142 170 IPR014014 GO:0003724
Lal6g0944 516 SMART helicmild6 393 474 IPR001650 -
Lal6g0944 516 SMART ultradead3 161 357 IPR014001 -
Lal6g0944 516 Pfam Helicase conserved C-terminal domain 368 474 IPR001650 -
Lal6g0944 516 Gene3D - 347 515 IPR027417 -
Lal6g0944 516 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 212 496 IPR027417 -
Lal6g0944 516 MobiDBLite consensus disorder prediction 107 133 - -
Lal6g0944 516 MobiDBLite consensus disorder prediction 31 64 - -
Lal6g0944 516 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 289 297 IPR000629 -
Lal6g0944 516 CDD DEADc_DDX6 144 344 - -
Lal6g0944 516 Gene3D - 101 346 IPR027417 -
Lal6g0944 516 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 173 343 IPR014001 -
Lal6g0944 516 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 12 9 516 - -
Lal6g0944 516 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 353 513 IPR001650 -
Lal6g0944 516 MobiDBLite consensus disorder prediction 1 64 - -
Lal6g0944 516 Pfam DEAD/DEAH box helicase 167 331 IPR011545 GO:0003676|GO:0005524
Lal6g0944 516 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 9 516 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal6g0944 Lal-Chr6 6575617 6582164 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal6g0944 144 506 Eukaryotic Initiation Factors Gene Family AT3G19760 39.178 4.34e-95 293
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal9g1410 9 15878014 15886586 Lal6g0944 6 6575617 6582164 LSH