Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g0943 ATGGGAAGAGCACCATGTTGTGAGAAAATGGGGTTAAAGAAAGGACCATGGACACCTGAAGAAGATGAGATTCTTGTGAATTTTATCAACAACAATGGTGGTCATGGAAGTTGGCGTTCTCTCCCAAAGTTGGCAGGTCTTCTTCGTTGTGGTAAGAGTTGCAGGCTTAGATGGACAAACTACCTTAGACCTGATATCAAACGTGGTCCTTTTACACTTGAGGAAGAAAAACTAGTCATACAACTTCATGGTATCCTTGGAAATAGGTGGGCTGCAATATCATCTCAGCTACCGGGAAGAACTGACAATGAGATCAAGAATTTATGGAACACACACTTAAAGAAACGGCTAATAAGAATGGGACTTGACCCTCAAACTCATTTGCCGATGTCCTATTCATGCTACCAAGTTGGTAAACCACTTGCATCATCTGTTTCGACTCGTCACATGGCGCAATGGGAGAGTGCAAGACTTGAAGCTGAAGCTAGGCTCTCAAGGGAGTCATCTTTGTTCAACAATGATCCTAATTCATTTGTTGATGCCAACAACAAAACTGATTCTGATTATTTTCTCCGGATATGGAACTCTGAAGTCGGAGAATCGTTTCGAGGCGCACGCAAATTCGATGACATAACTAGTCCTGTATCTTCAGGATCATCTTCAAACAAATGTGGTTCAGTGTCTGCTATTACAACAGAATTAGCAAGCAATGTGAAAGATGATTTGGAGTGGAGAAACTCAGATTCAGCAAGCTCTAATGACTTGGAAGACTCATCTGATACTGCATTGCAGCTCTTATTAGATTTTCCTATAAACAATGATATGAGCTTCTTAGAAGAAACCTCTTTTATTTCCCCCCTTTAG 864 0.4109 MGRAPCCEKMGLKKGPWTPEEDEILVNFINNNGGHGSWRSLPKLAGLLRCGKSCRLRWTNYLRPDIKRGPFTLEEEKLVIQLHGILGNRWAAISSQLPGRTDNEIKNLWNTHLKKRLIRMGLDPQTHLPMSYSCYQVGKPLASSVSTRHMAQWESARLEAEARLSRESSLFNNDPNSFVDANNKTDSDYFLRIWNSEVGESFRGARKFDDITSPVSSGSSSNKCGSVSAITTELASNVKDDLEWRNSDSASSNDLEDSSDTALQLLLDFPINNDMSFLEETSFISPL 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g0943 287 SMART sant 13 64 IPR001005 -
Lal6g0943 287 SMART sant 67 115 IPR001005 -
Lal6g0943 287 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Lal6g0943 287 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 245 281 - -
Lal6g0943 287 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 221 - -
Lal6g0943 287 CDD SANT 16 62 IPR001005 -
Lal6g0943 287 Pfam Myb-like DNA-binding domain 68 113 IPR001005 -
Lal6g0943 287 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Lal6g0943 287 Gene3D - 11 68 - -
Lal6g0943 287 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Lal6g0943 287 SUPERFAMILY Homeodomain-like 10 109 IPR009057 -
Lal6g0943 287 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Lal6g0943 287 CDD SANT 70 113 IPR001005 -
Lal6g0943 287 Gene3D - 70 117 - -
Lal6g0943 287 PANTHER PROTEIN ODORANT1-LIKE 245 281 - -
Lal6g0943 287 PANTHER PROTEIN ODORANT1-LIKE 1 221 - -
Lal6g0943 287 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal6g0943 Lal-Chr6 6568734 6571436 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal6g0943 1 280 MYB Transcription Factor Family AT3G61250 65.854 1.26e-125 358
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lal6g0943 Myb_DNA-binding 4.6e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal6g0943 K09422 - gmx:100816569 416.772
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal6g0943 6 6568734 6571436 Lal18g0758 18 9236996 9242648 LSH
Lal6g0943 6 6568734 6571436 Lal6g0943 6 6568734 6571436 PCT
Lal6g0943 6 6568734 6571436 Lal18g0758 18 9236996 9242648 PCT
Lal18g0758 18 9236996 9242648 Lal6g0943 6 6568734 6571436 PCT