Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g0940 ATGTCTTTCACTGGAACTTTGGACAAATGCAAGGCTTGTGATAAGACTGTTTATGTTGTTGATTTGTTAACTCTTGAAGGCATTCCTTACCATAAAAATTGCTTCAAATGTACCCACTGCAATGGAGTACTTACGATGAACACATACTCCTCCATGGATGGAGTCCTATACTGCAGGACACATTTTGAACAACTTTTTAAGGAATCTGGTAATTTTAGCAAGAACTTTCAAGCAGCAAAGTCTTCTGAGAAGCAGCCTGAGCTGAACAGGACCCCAAGTAAGCTCTCTTCCATGTTTAGTGGAACTTTAGAGAAATGTTCAGTTTGCACAAAAACTGTCTATCCACTTGAAAAGGTGACACTAGAAGGAGAATGGTTCCACAAGAATTGCTTTAGGTGTGCTCATGGAGGGTGTCACCTAACACATTCCTCATATGCTGCCCTAGATGGTGTCCTTTATTGTAGGGTCCATTTTGCACAACTTTTCATGGAGAAAGGGAACTATAGCCATGTACTTCAAGCTGCTGCACACAAGAGGAATGGTTCTTCTACACCTCCTGAAACTATTGAATTGCCATCACAAGAATTGCCACCACAATCTGAGGACAAAAAAGAAGATGAAACCTTTTGA 630 0.4063 MSFTGTLDKCKACDKTVYVVDLLTLEGIPYHKNCFKCTHCNGVLTMNTYSSMDGVLYCRTHFEQLFKESGNFSKNFQAAKSSEKQPELNRTPSKLSSMFSGTLEKCSVCTKTVYPLEKVTLEGEWFHKNCFRCAHGGCHLTHSSYAALDGVLYCRVHFAQLFMEKGNYSHVLQAAAHKRNGSSTPPETIELPSQELPPQSEDKKEDETF 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g0940 209 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 35 - -
Lal6g0940 209 Gene3D Cysteine Rich Protein 5 72 - -
Lal6g0940 209 Pfam LIM domain 10 65 IPR001781 -
Lal6g0940 209 Pfam LIM domain 106 161 IPR001781 -
Lal6g0940 209 PANTHER OS06G0237300 PROTEIN 1 206 IPR045268 GO:0051015
Lal6g0940 209 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 132 171 - -
Lal6g0940 209 MobiDBLite consensus disorder prediction 177 209 - -
Lal6g0940 209 ProSiteProfiles LIM domain profile. 104 164 IPR001781 -
Lal6g0940 209 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 98 131 - -
Lal6g0940 209 ProSitePatterns LIM zinc-binding domain signature. 10 44 IPR001781 -
Lal6g0940 209 PANTHER GATA TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 1 206 - -
Lal6g0940 209 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 36 76 - -
Lal6g0940 209 SMART lim_4 105 157 IPR001781 -
Lal6g0940 209 SMART lim_4 9 61 IPR001781 -
Lal6g0940 209 ProSiteProfiles LIM domain profile. 8 68 IPR001781 -
Lal6g0940 209 MobiDBLite consensus disorder prediction 177 195 - -
Lal6g0940 209 Gene3D Cysteine Rich Protein 102 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal6g0940 Lal-Chr6 6552340 6553878 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Lal6g0940 LIM 1.8e-09 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal6g0940 - K09377 gmx:100800234 362.844
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal6g0940 6 6552340 6553878 Lal6g0940 6 6552340 6553878 ECH
Lal6g0940 6 6552340 6553878 Lal22g0820 22 6128485 6130193 LSH
Lal6g0940 6 6552340 6553878 Lal18g0778 18 9625455 9626859 LSH
Lal9g1405 9 15814978 15817874 Lal6g0940 6 6552340 6553878 PCT
Lal1g2023 1 22367185 22369792 Lal6g0940 6 6552340 6553878 PCT
Lal6g0940 6 6552340 6553878 Lal9g1405 9 15814978 15817874 PCT
Lal6g0940 6 6552340 6553878 Lal1g2023 1 22367185 22369792 PCT