LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lal6g0939	ATGGATATAGTTGCTTTTAGTTTGCCAAAGTCAACAATGCCATTGGATTCTTTTGATTTTGGTTCTGCTTTTCTTTGCAATTCCAGAACTATTCTGAAAGCACGTTTTAGTGGTGTGAACAAGATTGGTATTAGTGGCTGTGGTAGAAATAAGAATAATTCAAGAGTGTTTTGTGTAGGAGAGTTCAAAGTTTCAAATTTGAAGAAAAGTTTGTCTTGTAAGAATGGCAATAATAATGTTCTTTTTATGGGAAATAGGGCAATTTGGTCAAAATGTCAGGCTAATGATTCCTTAGCATATGTTAATGGCAATGGCCGGAGTGTTAATCTTGATGACGAAGACTCTAATTCGGGGTCCATTTCGGGTAGTGAAGGATTGGAAGAAGAAAAATTGAGGAAAGAAGTTGGGGGTGAAGGTGAATCAGGGTTAGAAAGTGTCGATGAATTGAAAGGACTACTGCAAAAGGCATTAAAAGAGCTAGAAGTTGCGCGAGTAAATAGTGTCGTGTTTGAGGAGAAGGTTAAAAAGATATCAGAGACTGCAATTTTGTTGCATGACATAGCAGCGAGTGCTTGGAACGATGTTAATTCTACCCTTGATACCATCCAAGAAGTTGTGAGTGAAGAATTTTTTGCCAAAGAAGCTGTTCAAAAGGCAACAATGTCTCTTTCTTTAGCTGAAGCTAGGCTTGAAGTAGCCGTAGAATCTTTGGAGATTGAAAATGAAGCTTCTTCACCACAAGGTTCTAATGAGAATAATGTTGATATAGATATAGTGGATGAGGAGAAGGCACTTTTAGTTGCTAAGGAAGAGTTTGAGGCAAATTTAGTGAATTGTGAGGCAGATCTGAGGCGCTTGCAAAGTAGAAAGGAGGAGTTGCAGAATGAAGTGAACAAGTTGCATGAAATTGCAGAAAAGGCACAGCTGAATGCAGTGAAAGCAGAGGAGGATGTCACAAAGATAATGCTTTTAGCGGAGCAAGCTGTTTCCGTTGAACTTGAGGCTGCACAGCGTGTAAATGATGCAGAGATTGCACTAGAGAGAGCAGACAAGTCTTTATCTAGTTTTAATGCTGATACCATAGACACTCTACAAGTACAAGATGCTGTGGCTATTTCTGAGAAGGAGAAAGTGGTTCAACTTTTTCGTGGTGATAACATTGTTGAAAGAAACAAAGATTTCCCGATCGATGATGAATCTTTGCTTGCCGAACGAGCACCACAAATGGTATCTGATAAAAGCAGCCATGTTTTGGAAGGCATAAAGCAGTCTGATTATCTGAGTGATATTGATAATGGGCAGTTAAGCTTAGACTCTCTCAAAGAAGCTGAAGTCGAAGTGGAGAAGTCAAAGAGTGCAGTTCAAACAAAAAAACCAGAAATGCAAAAAGATTTGACTAGAGATAATTCACCCATTGCTCCCAAGGCATCACTGAAGAAGTCTTCCCGGTTTTTCCCTGCATCATTCTTCTCTTTTACTGTAGGTGAGACTGATCAAACACCAGAATCAGTTTTCCAGGGTTTCGTGGAGTCTACGCGGAAGCAGTTGCCCAAGCTTGTTTTCGGGTTATTATTAATGGGAGCTGGGCTTGTATTCTATTCCAATAGAGCAGAGAGGTCTGCTCAGCTGCTTCAGCAGCCAGAAGTCGTTGCAACCACTGTTGATGAAGTTTCCTTAAGTGCAAAGCCTCTGGTTAGGCAACTTCAGAAACTCCCCCAGAGAATTAAGAAAATTATTGCATCAATACCCAAACAAGAGGTGAATGAGGAGGAAGCCTCCCTCTTTGACATGCTCTGGTTATTACTTGCAAGTGTTATATTTGTGCCGATATTTCAAAAAATTCCTGGAGGCAGCCCTGTTCTGGGCTACTTGGCTGCCGGTATCTTGATTGGGCCTTATGGTCTCTCCATCATTCGTCACGTTCATGGAACAAAAGCAATAGCTGAATTTGGAGTTGTTTTCCTCTTATTCAATATTGGCCTGGAGCTCTCTGTTGAAAGGCTTAGTTCAATGAAGAAATATGTCTTTGGATTAGGCTCTGCTCAGGTTTTGATGACCGCTGTAGTCATTGGCTTGGTGGCTCATTATGTTTGTGGCCAAGCTGTCCCTGCTGCTATTGTCATTGGGAATGGGTTGGCATTATCATCGACTGCTGTTGTTCTGCAGGTATTACAGGAGAGAAGTGAGAGCACATCACGGCATGGACGGGCTACGTTTTCTGTTTTACTTTTTCAGGATTTCGCTGTTGTGGTGTTGCTAATACTCATACCTCTTATTTCACCTAATTCTTCCAAAGGAGGGGTTGGCTTTCAAGCCATTGCTGAAGCTCTTGGTCTGGCTGCTGTTAAGGCAGTAGTTGCCATCACTGCCATAATCGCAGGTGGACGTTTGCTGCTTCGACCAATATATAAGCAGATTGCAGAAAATCAAAATGCAGAAATATTTTCGGCAAATACACTTTTTGTTATACTTGGGACTAGTCTTCTCACAGCCAGAGCAGGACTTTCCATGGCATTGGGAGCATTTTTGGCTGGTTTACTACTGGCAGAAACTGAATTTTCCTTACAGATTGAATCTGATATTGCTCCATACCGTGGCCTTCTATTGGGTCTCTTCTTTATGACGGTTGGAATGTCAATTGATCCAAAACTTCTTTTTTCAAACTTTCCAGCCATTGCTGGGACACTGGGACTCTTATTATGTGGCAAGACTATCTTGGTTTCTTTAATTGGCAAAAGTTTTGGTATTTCAATCATTTCTGCCATAAGAGTTGGTCTTCTTCTTGCTCCTGGGGGAGAATTTGCATTCGTAGCTTTTGGGGAAGCTGTTAATCAGGGTATAATGTCTCCCCAGTTGTCCTCATTGCTGTTTCTTGTCGTTGGACTTTCAATGGCCCTCACACCATATCTAGCTGCAGGAGGTCAGCTGATCGCTTCCCGTTTTGAGCTGCATGATGTTCGGAGTTTATTACCTGTAGAAAGTGAGACAGATGACCTGCGAGATCATATCATCATTTGTGGATTTGGACGAGTTGGCCAGATCATTGCACAGCTTCTTTCTGAGAGACTTATTCCTTTTGTTGCATTAGATGTTAGAAGTGATAGAGTGACAATTGGGCGTTCTCTGGGTCTCCCTGTGTATTTTGGAGATGCTGGTAGTCGAGAGGTCCTACATAAAGTTGGGGCAGAAAGGGCAAGTGCTGCAGCAATAACTCTAGATTCCCCTGGTGCAAATTACAGAACAGTTTGGGCTCTGGCCAAGCACTTCCCAAATGTGAAAACTTTTGTTCGTGCTCATGATGTTGTTCATGGATTGAATTTAGAAAAGGCTGGAGCTACTGCTGTTGTCCCAGAGACTTTGGAACCAAGTCTTCAACTAGCAGCTGCAGTGCTTGCTCAGGCTAAACTTCCCACATCAGAGATTGCAGCATGTATAAATGAATTCAGAACCCGCCATCTGGCCGAACTCACAGAACTATGTGAGGCAAGTGGAAGTTCTCTTGGATATGGATATAATAGAATTATGAGCAAACCAAAATCTCAGTCTTCAGATTCATCAGATGAGGCACAAGCCTCTGAAGGGACACTGGCCATATGA	3597	0.4204	MDIVAFSLPKSTMPLDSFDFGSAFLCNSRTILKARFSGVNKIGISGCGRNKNNSRVFCVGEFKVSNLKKSLSCKNGNNNVLFMGNRAIWSKCQANDSLAYVNGNGRSVNLDDEDSNSGSISGSEGLEEEKLRKEVGGEGESGLESVDELKGLLQKALKELEVARVNSVVFEEKVKKISETAILLHDIAASAWNDVNSTLDTIQEVVSEEFFAKEAVQKATMSLSLAEARLEVAVESLEIENEASSPQGSNENNVDIDIVDEEKALLVAKEEFEANLVNCEADLRRLQSRKEELQNEVNKLHEIAEKAQLNAVKAEEDVTKIMLLAEQAVSVELEAAQRVNDAEIALERADKSLSSFNADTIDTLQVQDAVAISEKEKVVQLFRGDNIVERNKDFPIDDESLLAERAPQMVSDKSSHVLEGIKQSDYLSDIDNGQLSLDSLKEAEVEVEKSKSAVQTKKPEMQKDLTRDNSPIAPKASLKKSSRFFPASFFSFTVGETDQTPESVFQGFVESTRKQLPKLVFGLLLMGAGLVFYSNRAERSAQLLQQPEVVATTVDEVSLSAKPLVRQLQKLPQRIKKIIASIPKQEVNEEEASLFDMLWLLLASVIFVPIFQKIPGGSPVLGYLAAGILIGPYGLSIIRHVHGTKAIAEFGVVFLLFNIGLELSVERLSSMKKYVFGLGSAQVLMTAVVIGLVAHYVCGQAVPAAIVIGNGLALSSTAVVLQVLQERSESTSRHGRATFSVLLFQDFAVVVLLILIPLISPNSSKGGVGFQAIAEALGLAAVKAVVAITAIIAGGRLLLRPIYKQIAENQNAEIFSANTLFVILGTSLLTARAGLSMALGAFLAGLLLAETEFSLQIESDIAPYRGLLLGLFFMTVGMSIDPKLLFSNFPAIAGTLGLLLCGKTILVSLIGKSFGISIISAIRVGLLLAPGGEFAFVAFGEAVNQGIMSPQLSSLLFLVVGLSMALTPYLAAGGQLIASRFELHDVRSLLPVESETDDLRDHIIICGFGRVGQIIAQLLSERLIPFVALDVRSDRVTIGRSLGLPVYFGDAGSREVLHKVGAERASAAAITLDSPGANYRTVWALAKHFPNVKTFVRAHDVVHGLNLEKAGATAVVPETLEPSLQLAAAVLAQAKLPTSEIAACINEFRTRHLAELTELCEASGSSLGYGYNRIMSKPKSQSSDSSDEAQASEGTLAI	1198

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lal6g0939	1198	TIGRFAM	2a37: transporter, monovalent cation:proton antiporter-2 (CPA2) family	601	881	IPR004771	GO:0006812\|GO:0008324\|GO:0016021
	Lal6g0939	1198	MobiDBLite	consensus disorder prediction	109	123	-	-
	Lal6g0939	1198	Coils	Coil	146	166	-	-
	Lal6g0939	1198	MobiDBLite	consensus disorder prediction	1177	1198	-	-
	Lal6g0939	1198	ProSiteProfiles	RCK N-terminal domain profile.	1002	1124	IPR003148	GO:0006813
	Lal6g0939	1198	MobiDBLite	consensus disorder prediction	125	142	-	-
	Lal6g0939	1198	Gene3D	-	999	1162	-	-
	Lal6g0939	1198	Pfam	TrkA-N domain	1003	1116	IPR003148	GO:0006813
	Lal6g0939	1198	PANTHER	K(+) EFFLUX ANTIPORTER 3, CHLOROPLASTIC	53	1198	-	-
	Lal6g0939	1198	Pfam	Sodium/hydrogen exchanger family	600	970	IPR006153	GO:0006812\|GO:0015299\|GO:0016021\|GO:0055085
	Lal6g0939	1198	MobiDBLite	consensus disorder prediction	450	465	-	-
	Lal6g0939	1198	Coils	Coil	269	317	-	-
	Lal6g0939	1198	MobiDBLite	consensus disorder prediction	109	142	-	-
	Lal6g0939	1198	Gene3D	-	590	976	IPR038770	-
	Lal6g0939	1198	MobiDBLite	consensus disorder prediction	450	473	-	-
	Lal6g0939	1198	SUPERFAMILY	NAD(P)-binding Rossmann-fold domains	999	1139	IPR036291	-
	Lal6g0939	1198	PANTHER	K(+) EFFLUX ANTIPORTER 1, CHLOROPLASTIC-RELATED	53	1198	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lal6g0939	Lal-Chr6	6537374	6550380	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lal6g0939	92	1198	Inorganic Solute Cotransporters	AT4G00630	71.060	0.0	1393

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lal6g0939	-		-	gmx:100791174	1665.59

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lal6g0939	6	6537374	6550380	Lal6g0939	6	6537374	6550380	ECH
	Lal9g1398	9	15747867	15766115	Lal6g0939	6	6537374	6550380	LSH
	Lal9g1398	9	15747867	15766115	Lal6g0939	6	6537374	6550380	PCT
	Lal6g0939	6	6537374	6550380	Lal6g0939	6	6537374	6550380	PCT
	Lal6g0939	6	6537374	6550380	Lal9g1398	9	15747867	15766115	PCT