Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g0932 ATGTGGTTTGTTTCTAAAGAGAGTGTAAAACACAGTTCCAATTCCAAACTATACTCGCCGTTGGTATTAGCCATGGGAGAAGAAGAAGCAACAACAGCGACATTTTCAGAGCGTCGCCATAGAAAGTCGAAGAGGAAGTTCTCTAAGGTAAGAGAATCTGAGCAAATAGAGCGTCTTGAATCTCTTCCATGGAACTCTTCTATTTCTCAAGACGAACACGATGATCCTTTTTCCATGATTGTTGGCTCTAATGAAGTTGAAGGAGGTGGTTTTCTTTCACTAGAGGAGATTGATGAGGCTGAATACGGTTTGGATATTCCTGAACCTGAATATATTCAGAGGAATAAGAAGCTGAAATCTGAACATGACGCAGATCTGAATAATAAAAAGAGTGATTCTGGCGATGTGAAAGTAGAAACGGTTACAGATGAGGGAAATAAGTCTAACGAGAATAAGAAGAAAAAGAAAAAGAAGACGAAGAAGAAGAAGAAAGAAGTTACTGAAAACCTAGAAGTTGAGAAGACGGATACTGGTCTAGATACCAATGTGCAGAATGACATTGGAGAAAAGGAAATTGATGAAACTGAATTTTATGCTTGGAATGAGCTGAGACTTCATCCTCTGCTATTAAAAGCAGTATACAAGCTTGGCTTTAAGGAACCAACACCAATCCAGAAAGCTTGTATTCCAGCTGCTGCTCATCAAGGGAAGGATGTTATTGGGGCTGCTGAGACAGGATCTGGTAAAACACTTGCATTTGGTTTGCCCATTTTGCAACGCCTTTTGGAGGAGCGAGACAAGGCTGCCAACTTGTTTGAAGAAATGGATGATGAGAAAAAAATATATGCTCCTACAGGCCTTCTAAGGGCTCTTATTATTGCTCCAACTAGAGAACTTGCACTCCAGGTCACTGATCATCTCAAAGCAGTAGCCAAGCATATTAATGTCAGGGTGACACCTATAGTTGGGGGGATTTTAGCTGAAAAGCAGGAGAGACTTTTAAAAGCAAAACCCGAGATTGTTGTTGGGACTCCAGGGAGGTTATGGGAACTTATGTCATCTGGTGAAAAACATCTGTCCGAGTTACATTCACTGTCTTTCTTTGTGCTTGATGAGGCTGATCGAATGGTACAAAATGGTCATTTTAAAGAGTTGCAATCAATTATTGATATGCTTCCCATGTCCAATGTTTCTGCTGAAGATGATTCTCAATCTGCACAAAATTGTGTTACAGTGTCAAGTTACCAAAGAAAGAAAAGACAAACTCTTGTTTTTTCAGCTACTGTGGCTTTGTCTGCTGATTTTCGCAAAAAGCTGAAGCGTGGGTCGATAAAACAAAAGCAATCATTGGCAGATGGATTGAATTCTATTGAAACGCTTTCTGAACGAGCTGGGATGAGACCCAATGCTGCAATTATTGATCTTACGAATCCATCAATACTAGCAGCTAAGCTTGAGGAATCATTTATTGAATGCACGGAAGACGATAAAGATGCTTATTTGTATTATATCTTGACTGTCCATGGACAAGGCCGCACAATAGTTTTCTGTACGTCAATTGCAGCTTTGCGTCATATTTCTTCCATACTACGCATTCTTGGCGTTAATGTTTGGACCCTTCATGCCCAAATGCAGCAGCGAGCACGTTTGAAGGCCATGGATCGCTTTCGAGAAAAGGAAAACGGAATACTTATTGCTACGGATGTTGCTGCAAGGGGTCTCGATATTGCTGGTGTTAAAACTGTTTATGTTCATAGAAGTGGAAGAACAGCTAGAGCTTCTGCTGAAGGTTGTAGCATTGCTTTAATCTCACCTAAAGATACTGCAAAGTTTGCTTCATTGTGCAAGTCATTTTCAAAGGAAAACTTTCGGCGATTTCCTTTCGAGAACTCATACATGCCCGAGGTCCTAAAACGACTATCTCTTGCACGTCAAATAGACAAGATAACACGGAAGGATTCCCAGGAGAAGGCTGAAAAAACCTGGTTTGATCGGAATGCTAACTCAGTGGAATTAGTTACAGAAAATTATGACAGCGAGGAGGAACAAGTGAACAAACATAAGCAAACGAAAGCTAGCTCTGGGAAGTTGAAGAAATTGCAGCAGGAGCTCAACACACTGATCTCACGTCCTTTACAATCAAAATCATTTTCACATCGATATTTAGCAGGGGCTGGTGTCACACCTCTCCTTCAACAACAATTGCAACAATTAGCGAGGCAAAAAGTAAGTGATCAGAAAGGTTCAGTACTAGGTAAAAAGGGATTGGTTGTGATTGGTCAAGATTGTGTTGAAGCACTTCAGGCACTTCGGAGTTCTGGTGAAGAGGTGAGCATGGATGTGAAGGATAGGGCAGGGAAACAGAGAAATGCAGAGAATTTAAGAAGAAAAAGAAAACAAGAAAAAACACGTTTGCGTGATGAGCGGAGAAAGCAGAAGAAAAAGCTTAAAGAGGATGACGAGTAA 2466 0.4075 MWFVSKESVKHSSNSKLYSPLVLAMGEEEATTATFSERRHRKSKRKFSKVRESEQIERLESLPWNSSISQDEHDDPFSMIVGSNEVEGGGFLSLEEIDEAEYGLDIPEPEYIQRNKKLKSEHDADLNNKKSDSGDVKVETVTDEGNKSNENKKKKKKKTKKKKKEVTENLEVEKTDTGLDTNVQNDIGEKEIDETEFYAWNELRLHPLLLKAVYKLGFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPILQRLLEERDKAANLFEEMDDEKKIYAPTGLLRALIIAPTRELALQVTDHLKAVAKHINVRVTPIVGGILAEKQERLLKAKPEIVVGTPGRLWELMSSGEKHLSELHSLSFFVLDEADRMVQNGHFKELQSIIDMLPMSNVSAEDDSQSAQNCVTVSSYQRKKRQTLVFSATVALSADFRKKLKRGSIKQKQSLADGLNSIETLSERAGMRPNAAIIDLTNPSILAAKLEESFIECTEDDKDAYLYYILTVHGQGRTIVFCTSIAALRHISSILRILGVNVWTLHAQMQQRARLKAMDRFREKENGILIATDVAARGLDIAGVKTVYVHRSGRTARASAEGCSIALISPKDTAKFASLCKSFSKENFRRFPFENSYMPEVLKRLSLARQIDKITRKDSQEKAEKTWFDRNANSVELVTENYDSEEEQVNKHKQTKASSGKLKKLQQELNTLISRPLQSKSFSHRYLAGAGVTPLLQQQLQQLARQKVSDQKGSVLGKKGLVVIGQDCVEALQALRSSGEEVSMDVKDRAGKQRNAENLRRKRKQEKTRLRDERRKQKKKLKEDDE 821
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g0932 821 CDD SF2_C_DEAD 485 603 - -
Lal6g0932 821 Coils Coil 149 176 - -
Lal6g0932 821 Coils Coil 258 278 - -
Lal6g0932 821 MobiDBLite consensus disorder prediction 774 821 - -
Lal6g0932 821 Pfam DEAD/DEAH box helicase 222 430 IPR011545 GO:0003676|GO:0005524
Lal6g0932 821 Coils Coil 784 821 - -
Lal6g0932 821 CDD DEADc_DDX24 209 474 - -
Lal6g0932 821 MobiDBLite consensus disorder prediction 119 150 - -
Lal6g0932 821 PANTHER RNA HELICASE 114 742 - -
Lal6g0932 821 MobiDBLite consensus disorder prediction 119 167 - -
Lal6g0932 821 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 369 377 IPR000629 -
Lal6g0932 821 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 230 447 IPR014001 -
Lal6g0932 821 SMART helicmild6 524 594 IPR001650 -
Lal6g0932 821 MobiDBLite consensus disorder prediction 776 798 - -
Lal6g0932 821 Pfam Helicase conserved C-terminal domain 496 593 IPR001650 -
Lal6g0932 821 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 198 226 IPR014014 GO:0003724
Lal6g0932 821 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 194 430 IPR027417 -
Lal6g0932 821 PANTHER ATP-DEPENDENT RNA HELICASE DDX24 114 742 - -
Lal6g0932 821 SMART ultradead3 217 449 IPR014001 -
Lal6g0932 821 Gene3D - 146 444 IPR027417 -
Lal6g0932 821 Gene3D - 483 714 IPR027417 -
Lal6g0932 821 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 484 655 IPR001650 -
Lal6g0932 821 Coils Coil 670 690 - -
Lal6g0932 821 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 362 607 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal6g0932 Lal-Chr6 6480751 6490003 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal6g0932 179 619 Eukaryotic Initiation Factors Gene Family AT1G72730 25.536 6.49e-34 133
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal6g0932 K14805 - gmx:100806018 1202.58