Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g0922 ATGAATATGATGAGACGGCTTAAGAGCATTGCTTCTGGGAGAACCTCCATTTCTTCAGATCATAGTGTAGATTCTAGCACAAAAAGAGCTAAGTTTGATCAAGAAACTGAAGGGAAGGTCAATGAGGAAACAAATACCATTGAGAGAGGCGGCAAAGATCAGGCGGAGAGTGTAGGTACATCGCAAGAAACTATGGTCGACACATCCAGTGTATCTATGGTAGCTAGATCTGGGAAGCCAAATTATGATCAACTTCCAAAAGAAATGCATGAAATGAAAATTAGAGATGATAAAGCCAATAAGAATACTGAGAAGGATATAGAAGCAACCATAGTGAGTGGTCATGGAACAGAAACAGGTCAAATAATTACAACTGCTATTGGTGGTCGAGATGGACAACCAAAGCAGACAATCTCGTACATGGCTGAACGTGTGGTTGGGACTGGTTCTTTCGGCGTTGTTTTTCAGGCTAAGTGCCTTGAAACTGGTGAAGCAGTTGCCATCAAGAAGGTGCTGCAAGATAAAAGATATAAGAACAGGGAGCTCCAGGTTATTCGCATGCTTGAACATCCTAACGTTGTTCAACTAAAGCACTGTTTCTTTTCAACTACTGATAAAGATGAGCTGTACCTTAACCTTGTTCTGGAGTATGTGCCCGAAACTGTCTACAAAGTTTCAAAGCAATTTATTCGGACACAACATCATATGCCTATCATTTATGTTCAACTCTATACATACCAGATATGTCGTGCATTAAATTATTTACATCAAGTGATCGGCGTCTGTCATCGTGACATCAAACCCCATAACCTATTGGTTAATCCCCAGACTCATCAGTTAAAGATATGTGATTTTGGTAGTGCAAAGATGTTGGTACCTGGTGAGCCCAACATATCATACATATGCTCACGATATTATAGAGCTCCAGAACTTATATTTGGGGCAACTGAATACACAACTGCTATTGATATATGGTCTGCTGGTTGTGTTTTAGCTGAGTTCCTTATAGGACAGCCTTTGTTTCCTGGAGAGAGTGGGGTTGATCAGTTAGTGGAGATCATTAAGATCTTGGGGACACCAACCAGAGAAGAAATAAAGTGCATGAATCCGAACTACAATGAATTTAAGTTTCCTCAGATTAAAGCGCACCCTTGGCACAAGATTTTTGACAAGAGGATACCGCCTGAAGCAGTGGATCTTGTGTCAAGGCTTCTTCAGTATTCGCCAAATCTACGTTGCACTGCTTTGGCTGCGTGTGCACACCCCTTCTTCGATAGTCTACGAGACCCAAGTTTTAGCTTGCCAAATGGGCGACCAGTGCCACCTTTGTTCAATTTCACAGATCAAGAACTGGTAGATGCACCTGACGAGTTACGTCAACGTCTCATTCCTGCACATGCAAGAAGTTGA 1410 0.4177 MNMMRRLKSIASGRTSISSDHSVDSSTKRAKFDQETEGKVNEETNTIERGGKDQAESVGTSQETMVDTSSVSMVARSGKPNYDQLPKEMHEMKIRDDKANKNTEKDIEATIVSGHGTETGQIITTAIGGRDGQPKQTISYMAERVVGTGSFGVVFQAKCLETGEAVAIKKVLQDKRYKNRELQVIRMLEHPNVVQLKHCFFSTTDKDELYLNLVLEYVPETVYKVSKQFIRTQHHMPIIYVQLYTYQICRALNYLHQVIGVCHRDIKPHNLLVNPQTHQLKICDFGSAKMLVPGEPNISYICSRYYRAPELIFGATEYTTAIDIWSAGCVLAEFLIGQPLFPGESGVDQLVEIIKILGTPTREEIKCMNPNYNEFKFPQIKAHPWHKIFDKRIPPEAVDLVSRLLQYSPNLRCTALAACAHPFFDSLRDPSFSLPNGRPVPPLFNFTDQELVDAPDELRQRLIPAHARS 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g0922 469 MobiDBLite consensus disorder prediction 1 87 - -
Lal6g0922 469 CDD STKc_GSK3 135 427 IPR039192 -
Lal6g0922 469 MobiDBLite consensus disorder prediction 24 50 - -
Lal6g0922 469 ProSiteProfiles Protein kinase domain profile. 140 424 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal6g0922 469 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 6 469 - -
Lal6g0922 469 MobiDBLite consensus disorder prediction 55 77 - -
Lal6g0922 469 SMART serkin_6 140 424 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal6g0922 469 Gene3D Transferase(Phosphotransferase) domain 1 220 468 - -
Lal6g0922 469 ProSitePatterns Serine/Threonine protein kinases active-site signature. 261 273 IPR008271 GO:0004672|GO:0006468
Lal6g0922 469 MobiDBLite consensus disorder prediction 9 23 - -
Lal6g0922 469 Gene3D Phosphorylase Kinase; domain 1 125 219 - -
Lal6g0922 469 PANTHER SHAGGY-LIKE KINASE 6 469 - -
Lal6g0922 469 SUPERFAMILY Protein kinase-like (PK-like) 139 454 IPR011009 -
Lal6g0922 469 Pfam Protein kinase domain 140 424 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal6g0922 469 ProSitePatterns Protein kinases ATP-binding region signature. 146 170 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal6g0922 Lal-Chr6 6417684 6423256 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal6g0922 146 431 Core Cell Cycle Gene Families AT1G76540 36.027 5.86e-58 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Lal6g0922 Pkinase 2.7e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal6g0922 K00924 - gmx:100811346 801.201
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal6g0922 6 6417684 6423256 Lal6g0922 6 6417684 6423256 ECH
Lal9g1385 9 15551422 15557866 Lal6g0922 6 6417684 6423256 PCT
Lal1g2041 1 22556447 22562883 Lal6g0922 6 6417684 6423256 PCT
Lal6g0922 6 6417684 6423256 Lal9g1385 9 15551422 15557866 PCT
Lal6g0922 6 6417684 6423256 Lal1g2041 1 22556447 22562883 PCT