Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g0915 ATGGTGGAAGAGGGTGCATATGCCGTTGCAGTCGATACTCGTTCCGTAGAAGATTGGTTGTTAGAAGCACAAGAACTTGTTCCTACTGCACTTAATAAGGCAAGAGAGGTTAAGGGGTTCCCTGGTAGGTGGAAGATGATCATTTCCAAATTGGAGCAAATCCCGTCGCGCTTATCAGACTTGTCTAGCCATCCTTGTTTCTCGAAGAATGCGCTTTGCAAGGAGCAATTGCAGGCTGTGTCAAAGTCACTCAGAGAAGCAATTGAATTGGCTGAGTTGTGTGTGAAGGAGAAATACGAAGGTAAGCTTCGGATGCAAAGTGATCTTGATGCATTAACTGGGAAACTGGATTTGAATTTAAGGGATTGTGGCCTATTGATCAAGACGGGCGTGCTTGGTGAGGCTACTCTGCCATTGACTGTGTCTGGTCCTATGGCAGAATCTGATATTGCAACACATAGCAATATAAAGGACTTGCTTGCACGCCTTCAAATCGGTCACTTGGAAGCGAAGCATAGAGCTTTAGATAAGCTCTATGATGTTATGAGAGAAGATGAGAAGAATGTTTTAGCTGTTCTCGGTCGGAGCAACGTTGCTGCTTTAGTTCAATTGCTCACAGCAACATCTCCGAGGATAAGGGAGATGACCGTTACTGTTATATGCTCACTTGTAGAATCTGGAAGCTGCGAAAACTGGCTAGTTTCTGAAGGAGTTCTGCCGCCTCTTATAAGGCTCGTCGAATCAGGTAGTTCTGTGGGTAAAGAGAAGGCTACTGTGTCACTTCAGAGGTTGTCAATGTCAGCTGAAACAACCCGTGCAATTGTTGGACACGGTGGTGTTCGTCCTTTGATTGAGCTTTGTGAAACCGGCGATTCAGTGTCACAGGCTGCAGCTGCTTGTACTTTGAAGAATATATCATCTGTTCCGGAGGTTAGACAGGCTCTGGCTGAAGAAGGCATTGTGAGGGTTATGATTAATCTTCTTAACAACGGAATTTTATTGGGTTCGAAAGAGTATGCTGCCGAGTGTTTGCAGAATCTCACTGCAAGCAACGAGAATCTTAGAAGGTCTGTTATATCAGAAGGCGGTGTTAAGAGTCTTATGGCTTATCTCGATGGTCCACTTCCTCAAGAGTCTGCAGTTGGAGCACTGAGGAATTTGGTTGGATCAGTTCCTGAGGAAACTTTGGTTTCATTTGGCTTGCTTATGTGTTTGGTTCACGTGCTCAAGTCCGGATCCTTAGGTGCTCAGCAAGCTGCAGCATCGGTTATCTGCCGGGTTTGCAGCTCAATGGAGATGAAGAAAATGATCGGCGAATCGGGTTGCATCCCTCTTCTTATCAATATGCTTGAGGCTAAAGCAAACGGTGCTAGAGAGATTGCTGCACAAGCAATTGCAAGCTTGATGGTTGTGTCACAGAATCAAAGAGAAGTTAAGAAGGATGATAAAAGTGTGCCAAATCTGGTTCAGTTGCTCGATTCGAGTCCACAGAACACTGCAAAGAAATATGCTGTTTCTTGCCTTGGATCTCTTTCTTCAAGTAAGAGATGCAAGAAGCTGATGATTTCTTATGGAGCAATTGGTTATCTGAAGAAACTTGCAGATATGGATATTCCAGGAGCTAAAAAGTTACTTGAGCGATTGGAAAGAGGGAAATTGAGAAGCTTGTTTAGCAGGAAATAG 1683 0.4439 MVEEGAYAVAVDTRSVEDWLLEAQELVPTALNKAREVKGFPGRWKMIISKLEQIPSRLSDLSSHPCFSKNALCKEQLQAVSKSLREAIELAELCVKEKYEGKLRMQSDLDALTGKLDLNLRDCGLLIKTGVLGEATLPLTVSGPMAESDIATHSNIKDLLARLQIGHLEAKHRALDKLYDVMREDEKNVLAVLGRSNVAALVQLLTATSPRIREMTVTVICSLVESGSCENWLVSEGVLPPLIRLVESGSSVGKEKATVSLQRLSMSAETTRAIVGHGGVRPLIELCETGDSVSQAAAACTLKNISSVPEVRQALAEEGIVRVMINLLNNGILLGSKEYAAECLQNLTASNENLRRSVISEGGVKSLMAYLDGPLPQESAVGALRNLVGSVPEETLVSFGLLMCLVHVLKSGSLGAQQAAASVICRVCSSMEMKKMIGESGCIPLLINMLEAKANGAREIAAQAIASLMVVSQNQREVKKDDKSVPNLVQLLDSSPQNTAKKYAVSCLGSLSSSKRCKKLMISYGAIGYLKKLADMDIPGAKKLLERLERGKLRSLFSRK 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g0915 560 SMART arm_5 267 307 IPR000225 GO:0005515
Lal6g0915 560 SMART arm_5 350 389 IPR000225 GO:0005515
Lal6g0915 560 SMART arm_5 185 225 IPR000225 GO:0005515
Lal6g0915 560 SMART arm_5 472 513 IPR000225 GO:0005515
Lal6g0915 560 SMART arm_5 430 470 IPR000225 GO:0005515
Lal6g0915 560 SMART arm_5 308 349 IPR000225 GO:0005515
Lal6g0915 560 SMART arm_5 390 429 IPR000225 GO:0005515
Lal6g0915 560 PANTHER ARMADILLO/BETA-CATENIN-LIKE REPEAT PROTEIN 1 560 - -
Lal6g0915 560 Gene3D - 154 550 IPR011989 -
Lal6g0915 560 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 237 279 IPR000225 GO:0005515
Lal6g0915 560 Pfam Armadillo/beta-catenin-like repeat 269 307 IPR000225 GO:0005515
Lal6g0915 560 SUPERFAMILY ARM repeat 197 540 IPR016024 -
Lal6g0915 560 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 1 560 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal6g0915 Lal-Chr6 6347207 6350602 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal6g0915 206 479 U-box Gene Family AT3G54790 28.674 6.14e-19 89.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal6g0915 - - gmx:100809488 935.636
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal6g0915 6 6347207 6350602 Lal6g0915 6 6347207 6350602 ECH
Lal9g1387 9 15587376 15589046 Lal6g0915 6 6347207 6350602 PCT
Lal6g0915 6 6347207 6350602 Lal9g1387 9 15587376 15589046 PCT