Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g0914 ATGAAGCCAATCTTTGTTGGAAACCTTGATTTCGATTCGCGCCAATCTGATGTTGAGAGACTCTTCAGAAGATACGGCAAGGTTGATCGAGTTGATCTCAAATCCGGGTTTGCTTTTATCTACATGGAAGATGAACGTGATGCTGATTATGCTATTAGAAGACTTGATAGAACAGAATTTGGTAGAAAGGGGCGCCAGATACGTGTTGAGTGGTCTAAGCAAGATAGCGACAGAAGGAGGCCAGGTGGTGATTCAAAGAAATCTTCAACTAATACGAGGCCATCAAAGACTTTGTTTGTCATAAATTTTGATCCAGTTCACACCAGGACAAGGGATCTTGAGAAGCACTTTGATCCCTATGGGAAAATCTCGAATATAAGGATCAGAAGGAATTTTGCTTTTATTCAGTTTGAAACACAGGAGGATGCTACTAGAGCTTTGGATGCAACTAACTTGAGCAAGTTTCTGGATCGTGTTATCACTGTGGAGTATGCTATAAAAGATGATGATGACAGAAGGAATGGATACAGTCCTGATAGAAGAGGACGTGACTCCCCTGATGGGAGATATGACCGTCGCAGATCCCCAAGTCCATATCTTAGAGGTAGGGGTAGCCCAGACTATGGTCATGGATCAAATCCTGCTTCCAGGCCAGAACCTAGAGGAAGCCCCAAATATGAACGAGCTGAAAGCCCAGTGAATGGGAGATATGACAGCCGTTCACCGCCAGCCCGGGAAAGGTCGCGATCCTGA 753 0.4462 MKPIFVGNLDFDSRQSDVERLFRRYGKVDRVDLKSGFAFIYMEDERDADYAIRRLDRTEFGRKGRQIRVEWSKQDSDRRRPGGDSKKSSTNTRPSKTLFVINFDPVHTRTRDLEKHFDPYGKISNIRIRRNFAFIQFETQEDATRALDATNLSKFLDRVITVEYAIKDDDDRRNGYSPDRRGRDSPDGRYDRRRSPSPYLRGRGSPDYGHGSNPASRPEPRGSPKYERAESPVNGRYDSRSPPARERSRS 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g0914 250 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 4 214 - -
Lal6g0914 250 MobiDBLite consensus disorder prediction 71 94 - -
Lal6g0914 250 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 96 167 IPR000504 GO:0003723
Lal6g0914 250 MobiDBLite consensus disorder prediction 169 198 - -
Lal6g0914 250 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 74 IPR000504 GO:0003723
Lal6g0914 250 MobiDBLite consensus disorder prediction 169 250 - -
Lal6g0914 250 PANTHER - 4 214 - -
Lal6g0914 250 Gene3D - 86 246 IPR012677 -
Lal6g0914 250 SMART rrm1_1 97 163 IPR000504 GO:0003723
Lal6g0914 250 SMART rrm1_1 3 70 IPR000504 GO:0003723
Lal6g0914 250 MobiDBLite consensus disorder prediction 221 250 - -
Lal6g0914 250 MobiDBLite consensus disorder prediction 71 86 - -
Lal6g0914 250 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 63 IPR000504 GO:0003723
Lal6g0914 250 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 98 160 IPR000504 GO:0003723
Lal6g0914 250 SUPERFAMILY RNA-binding domain, RBD 4 170 IPR035979 GO:0003676
Lal6g0914 250 Gene3D - 1 85 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal6g0914 Lal-Chr6 6335737 6346058 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal6g0914 4 170 Eukaryotic Initiation Factors Gene Family AT1G49760 23.280 3.23e-09 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal6g0914 K12893 - gmx:100797778 398.667
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal6g0914 6 6335737 6346058 Lal6g0914 6 6335737 6346058 ECH