Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g0913 ATGAGTTCAGGCACCAATTTAGTGACCACAGCCATTGGTTTTGTGCTGAGTGCAACTTTCATTGTATTTGTATGCACAAGAATAATTTGTGGAAGACTAACAGGGAGTATGGGATTACGGAATCTACATGAGATTGAATCAATAAGAAGAGATATAGAACAGCCAGAACATCATGTTAATGGACCTGATCCTGCTCTTATTGCTGCAATCCCTTCTTTCAAGTTCAACCAAGAGGCCTTCACTTCCATTCAATATACACAGTGTGTGATATGTTTGGCAGATTACAAAGAACAAGAGTTATTACGCATAATACCAAAATGTGGCCATAGTTTTCATCTTGATTGCATTGATTTGTGGCTGAGAAAACAACCAGCATGCCCCTTATGCCGTTTGCCACTGCAAAATGCTTGTGACACAAAACATGTAGGACCTATTACAATTATTACCATCAACCAATCTCTTGATGAGTCTAATAGTCCAGAAAGGAACATAAACAATGAGTTATGCTAA 510 0.3824 MSSGTNLVTTAIGFVLSATFIVFVCTRIICGRLTGSMGLRNLHEIESIRRDIEQPEHHVNGPDPALIAAIPSFKFNQEAFTSIQYTQCVICLADYKEQELLRIIPKCGHSFHLDCIDLWLRKQPACPLCRLPLQNACDTKHVGPITIITINQSLDESNSPERNINNELC 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g0913 169 Pfam Ring finger domain 87 130 IPR001841 -
Lal6g0913 169 ProSiteProfiles Zinc finger RING-type profile. 88 130 IPR001841 -
Lal6g0913 169 PANTHER OS11G0150450 PROTEIN 1 157 - -
Lal6g0913 169 SUPERFAMILY RING/U-box 87 152 - -
Lal6g0913 169 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 63 139 IPR013083 -
Lal6g0913 169 SMART ring_2 88 129 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal6g0913 Lal-Chr6 6326567 6328415 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal6g0913 2 167 C3H Transcription Factor Family AT1G04360 34.595 7.42e-20 83.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal6g0913 - - gmx:100780922 240.736
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal6g0913 6 6326567 6328415 Lal6g0913 6 6326567 6328415 ECH
Lal1g2035 1 22489216 22492697 Lal6g0913 6 6326567 6328415 PCT
Lal6g0913 6 6326567 6328415 Lal1g2035 1 22489216 22492697 PCT