LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lal6g0903	ATGGTGAGAGGAAAGACTCAAATGAAGTTTATAGAGAACGCCACAAGCAGACAAGTAACCTTTTCAAAGAGGCGTAATGGTTTGTTGAAGAAGGCTTTTGAGTTATCAGTTCTTTGTGATGCTGAAGTTGCTCTTATTGTTTTCTCTCCCAGAGGCAAGCTTTATGAATTTGCTAGCTCCAGCATGCAGGAGACAATTGAACGATATCGCAGGCATGCAAAGGATACTCCAACAACACCCAGATCAGTTGAACAAAATATGCAGCATTTGAAGCAAGAAGCATCAAGCATGATGGAGAAAATTGACCTACTTGAAGCTTCAAAACGGAAACTCCTAGGAGAAGGTTTGGGTTCATGCTCCATTGATGAATTGCAAGAGATAGAAAAACAGTTGGAGAGGAGTGTAGGCAATGTTCGAGCAAGAAAGACTCAGGTTTTCAAGGAACAAATTCAGCAGCTAAAAGAAAAGGAAAAAACCCTAGTTGCTGAAAATTGCAGGCTCTCTTTAAAGTATGGTATCTGTCCACAACCAGCAACAAAAGATGAAAGAGAAAAACATCCTCAAGCATATGCAGAAAGTAGTAGTCCAAGTAATTCAGATGTAGAGACTGAATTGTTCATTGGACTTCCAGAAACAAGACCAAGACGCATTTCTCCTACTCAACACTAG	669	0.4021	MVRGKTQMKFIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGKLYEFASSSMQETIERYRRHAKDTPTTPRSVEQNMQHLKQEASSMMEKIDLLEASKRKLLGEGLGSCSIDELQEIEKQLERSVGNVRARKTQVFKEQIQQLKEKEKTLVAENCRLSLKYGICPQPATKDEREKHPQAYAESSSPSNSDVETELFIGLPETRPRRISPTQH	222

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lal6g0903	222	PANTHER	MADS-BOX PROTEIN SOC1	1	211	-	-
	Lal6g0903	222	Pfam	K-box region	84	170	IPR002487	GO:0003700\|GO:0005634\|GO:0006355
	Lal6g0903	222	Gene3D	-	14	100	IPR036879	GO:0003677\|GO:0046983
	Lal6g0903	222	SMART	madsneu2	1	60	IPR002100	GO:0003677\|GO:0046983
	Lal6g0903	222	MobiDBLite	consensus disorder prediction	176	222	-	-
	Lal6g0903	222	CDD	MADS_MEF2_like	3	75	IPR033896	GO:0000977\|GO:0045944
	Lal6g0903	222	PRINTS	MADS domain signature	3	23	IPR002100	GO:0003677\|GO:0046983
	Lal6g0903	222	PRINTS	MADS domain signature	23	38	IPR002100	GO:0003677\|GO:0046983
	Lal6g0903	222	PRINTS	MADS domain signature	38	59	IPR002100	GO:0003677\|GO:0046983
	Lal6g0903	222	Coils	Coil	87	107	-	-
	Lal6g0903	222	Pfam	SRF-type transcription factor (DNA-binding and dimerisation domain)	10	57	IPR002100	GO:0003677\|GO:0046983
	Lal6g0903	222	ProSiteProfiles	K-box domain profile.	87	177	IPR002487	GO:0003700\|GO:0005634\|GO:0006355
	Lal6g0903	222	PANTHER	MADS BOX PROTEIN	1	211	-	-
	Lal6g0903	222	SUPERFAMILY	SRF-like	3	74	IPR036879	GO:0003677\|GO:0046983
	Lal6g0903	222	ProSitePatterns	MADS-box domain signature.	3	57	IPR002100	GO:0003677\|GO:0046983
	Lal6g0903	222	ProSiteProfiles	MADS-box domain profile.	1	61	IPR002100	GO:0003677\|GO:0046983
	Lal6g0903	222	Coils	Coil	121	141	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lal6g0903	Lal-Chr6	6248423	6258016	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lal6g0903	1	158	MADS-box Gene Family	AT2G45660	77.848	1.22e-86	251

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MADS-MIKC	Lal6g0903		K-box	1.4e-26	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lal6g0903	-		-	gmx:100807963	310.842

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lal6g0903	6	6248423	6258016	Lal6g0903	6	6248423	6258016	ECH
	Lal6g0903	6	6248423	6258016	Lal22g0802	22	5925645	5939445	LSH