Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g0902 ATGGGTAGAGGGAGAGTTGAGTTGAAGAGGATAGAGAACAAAATCAATCGCCAAGTTACTTTCTCAAAAAGAAGAAATGGTTTGCTCAAGAAAGCATATGAACTCTCAGTTCTTTGTGATGCTGAGGTTGCACTCATCATTTTCTCTAGCAGAGGCAAACTTTGTGAATTTGGAAATGCTGGCATTACCAAGACTATTGAGCGATACCAACGTTGTTCTTTTACTCCTCAAGATGACCATGTAGAATGTGAAACTCAGAGCTGGTACCAAGAGGTGTCAAAGCTGAAAGCAAAATATGAGTCTCTTCAAAGGACTCAAAGGCATTTGCTTGGGGAAGATCTTGGACCATTGAGCATAAAGGAGCTACAGAATCTTGAGAAACAGCTTGAAGGAGCTTTAGCACAAGCTAGACAAAGGAAGACACAAACTATGGTTGAACAAATGGAAGATCTTCGTAGGAAGGAACGCCATCTTGGAGATATGAATAATCAGCTTAGACTCAAGCTTGAAGCAGAGGGATATAATCTTAAAGCTATGGAAAACATGTGGAGTAGTTCTACTTCTGCTGTTGGAAATAGTAGCTTTCCTTTCCACCTTTCTCAAACCAACCCTATGGATTGCCAACCAGAACCTTTCTTGCAAATAGGGTACCAACAATATGTCCAAGCTGAGACATCTAATGTTAATGTTCCAAAGAGCATGGCTTGTGAGACAAACTTCATGCAGGGATGGGTCCTTTGA 741 0.4089 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLCEFGNAGITKTIERYQRCSFTPQDDHVECETQSWYQEVSKLKAKYESLQRTQRHLLGEDLGPLSIKELQNLEKQLEGALAQARQRKTQTMVEQMEDLRRKERHLGDMNNQLRLKLEAEGYNLKAMENMWSSSTSAVGNSSFPFHLSQTNPMDCQPEPFLQIGYQQYVQAETSNVNVPKSMACETNFMQGWVL 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g0902 246 SUPERFAMILY SRF-like 2 81 IPR036879 GO:0003677|GO:0046983
Lal6g0902 246 Coils Coil 119 142 - -
Lal6g0902 246 ProSiteProfiles K-box domain profile. 85 175 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lal6g0902 246 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lal6g0902 246 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lal6g0902 246 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lal6g0902 246 PANTHER MADS BOX PROTEIN 1 230 - -
Lal6g0902 246 Gene3D - 13 80 IPR036879 GO:0003677|GO:0046983
Lal6g0902 246 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Lal6g0902 246 PANTHER MADS-BOX TRANSCRIPTION FACTOR 17 1 230 - -
Lal6g0902 246 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Lal6g0902 246 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lal6g0902 246 CDD MADS_MEF2_like 2 73 IPR033896 GO:0000977|GO:0045944
Lal6g0902 246 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Lal6g0902 246 Pfam K-box region 84 169 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal6g0902 Lal-Chr6 6240015 6245525 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal6g0902 1 246 MADS-box Gene Family AT2G45650 65.217 2.51e-113 323
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lal6g0902 K-box 6.7e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal6g0902 K09264 - gmx:100820061 408.683
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal6g0902 6 6240015 6245525 Lal6g0902 6 6240015 6245525 ECH
Lal16g1247 16 8711880 8720836 Lal6g0902 6 6240015 6245525 ECH
Lal6g0902 6 6240015 6245525 Lal22g0801 22 5915803 5921800 LSH