Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g0885 ATGTCTCACTTCGGAAGGTCTGGTCCTCCGGACATCTCTGACACCTACTCTCTCCTTGTTCTCAACATCACTTTCCGTACTACCGCTGATGACCTATTCCCCTTGTTTGATAAGTATGGCAAGGTTGTAGACATTTTCATCCCTAAAGATCGAAGGACTGGTGATTCGAGGGGTTTTGCATTTGTGCGCTACAAATATGCTGATGAAGCTTCAAAAGCTGTGGATAGGCTCGATGGGAGAATGGTTGATGGTCGTGAAATAACTGTCCAGTTTGCAAAGTATGGCCCAAATGCTGAGAGAATTCACAAAGGAAGGATAATTGAAACATCCCCAAAACCAATTTCAAGCCACAAGTCAAGGAGCCGCAGTCCCAGGAAAAGGCATCGTGATGACTACCGAGACAGAGACTATAGGAGGAGAAGCCGCAGCAGAAGTTATGATAGATATGAACGTGACAGATACCGTGGGAGAGACAGGGATTATCGTCGCCGAAGCAGGAGCCGCAGTGCCAGTCCTGATTACAAGAGCCGTAGAAGAGGACGCTATGACGATGAGCGTCATTGCAGAAGTCCGAGTCGATCTGTGGATAGCCGCTCCCCTGCCCGACACAGTCCTAGTCCTCGAAGGAGTCCTTCCCCAAAGAAGAGTATCTCACCTCAAAGGAGTCTTTCGCCAAGGAAAAGCCCACGGGATGCAAGTCCTGACAATCGTAGCCGCAATGGACGGTCTGCTTCACCTCGCAGTGTCTCACCTCGTGGTCGCCCTGATGCTTCACGAAGTCCATCCCCTCGCCATTCAAATGGTGATGTGCTTGTTGACATGGTTGCTGTTGGTGCTGTTTCTATCTCATTGATGATTGGTCGTGAGTTTGATGCTGATTGCAAGAGTATGCTGGTTTTTAGAAGTATGATTGTTTTACCAGTGTGCTGGTTTGATAGACAATTAGTTGACCTGGTTTTTACCTGA 966 0.4824 MSHFGRSGPPDISDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPKDRRTGDSRGFAFVRYKYADEASKAVDRLDGRMVDGREITVQFAKYGPNAERIHKGRIIETSPKPISSHKSRSRSPRKRHRDDYRDRDYRRRSRSRSYDRYERDRYRGRDRDYRRRSRSRSASPDYKSRRRGRYDDERHCRSPSRSVDSRSPARHSPSPRRSPSPKKSISPQRSLSPRKSPRDASPDNRSRNGRSASPRSVSPRGRPDASRSPSPRHSNGDVLVDMVAVGAVSISLMIGREFDADCKSMLVFRSMIVLPVCWFDRQLVDLVFT 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g0885 321 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR SC35 1 269 - -
Lal6g0885 321 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 88 IPR000504 GO:0003723
Lal6g0885 321 MobiDBLite consensus disorder prediction 127 193 - -
Lal6g0885 321 SMART rrm2_1 17 90 IPR003954 GO:0003676
Lal6g0885 321 SMART rrm1_1 17 90 IPR000504 GO:0003723
Lal6g0885 321 Gene3D - 4 103 IPR012677 -
Lal6g0885 321 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 94 IPR000504 GO:0003723
Lal6g0885 321 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 1 269 - -
Lal6g0885 321 MobiDBLite consensus disorder prediction 194 227 - -
Lal6g0885 321 MobiDBLite consensus disorder prediction 100 268 - -
Lal6g0885 321 SUPERFAMILY RNA-binding domain, RBD 8 101 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal6g0885 Lal-Chr6 6101333 6104600 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal6g0885 13 92 Eukaryotic Initiation Factors Gene Family AT3G11400 33.750 3.14e-09 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal6g0885 K12891 - gmx:100778928 341.658