Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g0883 ATGGATTCTGCGTTAACCGTCACTACGACGGCGCAGATAGCGCTTCTCAAGGCTCTCCACCGTCACTTCACCGCTCCTCCTCACACCATCCTCCTCCGCCGCAACGTCAAACACGTTCTTACTTCTTACAACCGTTGCCATCGCATTTCCGCCTCTTTTGCTTCTGCTTCGCCATCACGCTCACTTTGCTTTTTCGATTCACTGTTCCGCCGAACTCCGTTCCGTTTGCGGTGCGTTTCGAGCTCAGCTGCTTCATTTGCTTCTTCCGCCGGTGGAGGAAATGACGGTTCCGGAGCCGGCGTAGGAGGTGGTGGTTCTGGCGGTGAGTCTGGAGATGGTAATCTGAAAGTGGTCGTAGATGCGGCGGCTCAGGATCTTTCGGCACTTTCGTCTGATGTTATTATTCTGGACGTTTCGGGAATGGCATGCGGTGGATGCGCTGCAAATGTGAAAAGGATTCTGGAAAGTCAACCACAAGTGTCATCGGCTAGTGTAAATCTAACAACAGAGACAGCAATTGTTTGGCCTGTATCTGAAGCAAAGACTGCACCAAATTGGCAAAAGCAATTAGGGGAGGCACTCGCAGAGCATTTAACTGGCTGTGGTTTTAATTCTAGCCTTCGAGATTCAGCGCGAGACAATTTCCTCCAAATTTTTCAAAGGAAGATTGAGGAAAAGCGTAAACAATTAAGAGAAAGTGGTCGTGAGCTAGCTGTTTCTTGGGCCCTATGTGCCGTCTGTCTTGTTGGCCATCTCTCTCATTTCTGTGCAGCAAAAGCACCATGGGTCCATGCATTTCATTCCACTGGATTTCATCTGTCTTTGTCTTTGTTTACGTTGCTTGGTCCTGGTCGTCAACTTATCCTTGATGGTTTGAAAAGTCTTCTTAAAAGGGCACCAAACATGAACACCTTAGTTGCTCTTGGGGCTCTATCTTCATTTACAGTCAGTTCATTTGCTGCCTTTCTGCCAAAATTGGGTTGGAAGGCTTTCTTCGAAGAACCAATTATGCTAATTGCATTTGTCTTGTTAGGAAGGAATCTTGAACAGAGAGCAAAAATTAAAGCAACCAGTGATATGACAGGACTTCTTAGTATGCTGCCATCAAAAGCTCGCCTGCTTGTTAACAATGCGGAAACAGAAGTTGGCTCAATTGTTGAAGTTCCTTCTGATAGTCTTTCTGTTGGAGACCAGATTATTGTGTTACCTGGAGACTGTATTCCAGCAGATGGAGTTGTCCAAGTTGGTAGGAGCACTGTAGATGAATCAAGTTTCACCGGGGAGCCACTTCCAGTAACAAAACTACCCGGGAGTGAGGTCGCAGCTGGAAGTATAAATCTTAATGGAACTCTTACGATTAAAGTGCGGAGACCAGGTGGTGAGACTGCTATGGCAGACATTGTTCGTCTAGTTGAGGAGGCACAGAGTAGAGAAACTCCAGTACAGCGGTTGGCGGACAAGGTGGCTGGACACTTCACTTATGGAGTGATGGCAGCCTCTCTTACCACATTTACATTCTGGAGTCTGTTTGGCACAAACATTTTACATGCTTCTTTGTATCAAGGAAGTGCAGTTTCATTGGCTTTGCAGCTTGCTTGCAGTGTTCTGGTTATTGCTTGTCCATGTGCGCTTGGGTTAGCCACACCTACTGCTGTGCTGGTTGGAACTTCTTTGGGAGCTACAAGAGGATTACTTTTGCGTGGTGGAAATATTCTAGAGAAGTTTGCCATGGTGAATGCTGTTGTGTTTGACAAAACAGGGACCCTGACGGTTGGTCGACCTGTTGTGACAAAGATTGTCACTCCTACGTGCAGACAAAATGCAAATTCAAGCCAAACTGAAGAAAATACTTGGTCTGATGTTGAAGTTCTGAGGTTAGCAGCTGCAGTAGAATCAAATTCAGTACATCCAGTTGGAAAAGCGATTGTGGATGCTGCTAAGGAATTTAACTGTCATAATGCCAAGGTAGCAGATGGAACTTTCCTGGAAGAACCTGGATCTGGTGCAGTTGCAACCATTGATGACAAAAAGGTTTCTGTTGGAACATGGGAATGGATCACCAGACATGGAATTAACAACAGTATCCAGCAAGAAGTGGAGGAGTGTAAAAACCAATCTGTTGTTTATATTGGAGTTAATGATATTCTAGCTGGCCTAATTTATTTTGAAGATGAAATAAGGGAAGATGCAAGACATGTTGTTGACACATTGTCTAAGCAAAATATTGATGTATACATGCTCTCTGGGGACAAAAGGAATGCTGCTGAGTATGTTGCATCTCTTGTTGGAATTCCTAAGGAGAAGGTGCTATCTGGAGTGAAACCAGATGAGAAAAAGAGATTCATTAATGAACTACAGAAGGGTCCGAACATTGTAGCTATGGTTGGTGATGGAATTAATGATGCAGCTGCCCTGGCTGCTTCACATATTGGCATTGCATTAGGTGGAGGTGTTGGGGCTGCTAGTGAGGTGTCTTCAATTGTATTGATGCGCAACCAGCTCTCACAGCTACTTGATGCTTTGGAGCTTAGCAGGCTAACCATGAATACTGTAAAACAAAATCTTTGGTGGGCTTTTATTTACAACATTGTTGGGATTCCAATTGCAGCTGGAGTGTTATTTCCTGTAAATGGGACCATGCTGACTCCATCAATTGCAGGTGCTCTCATGGGGTTGAGTTCCATTGGCGTAATGTCTAACTCATTACTTCTGAGATACAAATTTTCCTCAAACCAGAAACAAGCACATAGTACATTACCAAAGATCAAAATCCATGCCGATTCCGATTTGCCTCGCCAAAATCAGAAAATAAAATATTCAAATTAG 2826 0.4452 MDSALTVTTTAQIALLKALHRHFTAPPHTILLRRNVKHVLTSYNRCHRISASFASASPSRSLCFFDSLFRRTPFRLRCVSSSAASFASSAGGGNDGSGAGVGGGGSGGESGDGNLKVVVDAAAQDLSALSSDVIILDVSGMACGGCAANVKRILESQPQVSSASVNLTTETAIVWPVSEAKTAPNWQKQLGEALAEHLTGCGFNSSLRDSARDNFLQIFQRKIEEKRKQLRESGRELAVSWALCAVCLVGHLSHFCAAKAPWVHAFHSTGFHLSLSLFTLLGPGRQLILDGLKSLLKRAPNMNTLVALGALSSFTVSSFAAFLPKLGWKAFFEEPIMLIAFVLLGRNLEQRAKIKATSDMTGLLSMLPSKARLLVNNAETEVGSIVEVPSDSLSVGDQIIVLPGDCIPADGVVQVGRSTVDESSFTGEPLPVTKLPGSEVAAGSINLNGTLTIKVRRPGGETAMADIVRLVEEAQSRETPVQRLADKVAGHFTYGVMAASLTTFTFWSLFGTNILHASLYQGSAVSLALQLACSVLVIACPCALGLATPTAVLVGTSLGATRGLLLRGGNILEKFAMVNAVVFDKTGTLTVGRPVVTKIVTPTCRQNANSSQTEENTWSDVEVLRLAAAVESNSVHPVGKAIVDAAKEFNCHNAKVADGTFLEEPGSGAVATIDDKKVSVGTWEWITRHGINNSIQQEVEECKNQSVVYIGVNDILAGLIYFEDEIREDARHVVDTLSKQNIDVYMLSGDKRNAAEYVASLVGIPKEKVLSGVKPDEKKRFINELQKGPNIVAMVGDGINDAAALAASHIGIALGGGVGAASEVSSIVLMRNQLSQLLDALELSRLTMNTVKQNLWWAFIYNIVGIPIAAGVLFPVNGTMLTPSIAGALMGLSSIGVMSNSLLLRYKFSSNQKQAHSTLPKIKIHADSDLPRQNQKIKYSN 941
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g0883 941 SUPERFAMILY Calcium ATPase, transduction domain A 383 471 IPR008250 -
Lal6g0883 941 SUPERFAMILY Calcium ATPase, transmembrane domain M 332 874 IPR023298 -
Lal6g0883 941 Gene3D - 593 726 IPR023299 GO:0000166
Lal6g0883 941 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 621 874 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lal6g0883 941 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 375 606 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lal6g0883 941 CDD HMA 136 191 IPR006121 GO:0046872
Lal6g0883 941 MobiDBLite consensus disorder prediction 86 107 - -
Lal6g0883 941 ProSiteProfiles Heavy-metal-associated domain profile. 133 207 IPR006121 GO:0046872
Lal6g0883 941 PANTHER ATP7, ISOFORM B 68 906 - -
Lal6g0883 941 TIGRFAM ATPase-IB_hvy: heavy metal translocating P-type ATPase 302 904 IPR027256 GO:0006812|GO:0016021|GO:0019829
Lal6g0883 941 TIGRFAM ATPase-IB1_Cu: copper-translocating P-type ATPase 284 905 - -
Lal6g0883 941 ProSitePatterns Heavy-metal-associated domain. 138 167 IPR017969 GO:0046872
Lal6g0883 941 ProSitePatterns E1-E2 ATPases phosphorylation site. 584 590 IPR018303 -
Lal6g0883 941 PRINTS P-type cation-transporting ATPase superfamily signature 421 435 - -
Lal6g0883 941 PRINTS P-type cation-transporting ATPase superfamily signature 582 596 - -
Lal6g0883 941 PRINTS P-type cation-transporting ATPase superfamily signature 718 729 - -
Lal6g0883 941 PRINTS P-type cation-transporting ATPase superfamily signature 740 750 - -
Lal6g0883 941 PRINTS P-type cation-transporting ATPase superfamily signature 795 814 - -
Lal6g0883 941 PRINTS P-type cation-transporting ATPase superfamily signature 818 830 - -
Lal6g0883 941 SUPERFAMILY HAD-like 581 901 IPR036412 -
Lal6g0883 941 PRINTS Copper-transporting ATPase signature 287 306 - -
Lal6g0883 941 PRINTS Copper-transporting ATPase signature 335 354 - -
Lal6g0883 941 PRINTS Copper-transporting ATPase signature 355 373 - -
Lal6g0883 941 PRINTS Copper-transporting ATPase signature 565 580 - -
Lal6g0883 941 PRINTS Copper-transporting ATPase signature 772 789 - -
Lal6g0883 941 PRINTS Copper-transporting ATPase signature 868 882 - -
Lal6g0883 941 Pfam Heavy-metal-associated domain 136 202 IPR006121 GO:0046872
Lal6g0883 941 Pfam E1-E2 ATPase 366 560 - -
Lal6g0883 941 SFLD p-type atpase 565 845 IPR044492 -
Lal6g0883 941 SUPERFAMILY HMA, heavy metal-associated domain 134 181 IPR036163 GO:0046872
Lal6g0883 941 Coils Coil 216 236 - -
Lal6g0883 941 CDD P-type_ATPase_Cu-like 235 905 - -
Lal6g0883 941 Gene3D - 352 475 - -
Lal6g0883 941 Pfam haloacid dehalogenase-like hydrolase 578 808 - -
Lal6g0883 941 Gene3D - 133 210 - -
Lal6g0883 941 Gene3D - 573 845 IPR023214 -
Lal6g0883 941 SFLD C1.7: P-type atpase like 565 845 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal6g0883 Lal-Chr6 6073122 6093130 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal6g0883 293 925 Primary Pumps ATPases AT1G63440 38.863 2.93e-125 402
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal6g0883 K17686 - gmx:100796210 1424.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal6g0883 6 6073122 6093130 Lal6g0883 6 6073122 6093130 ECH