Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g0871 ATGGCAAGTGGCAAGCTTTATGGGGGTCCAAATATGACAGTTCTGCACCAAAATGAAAGGCTCCCTCGTTCCTCTGAACTCCTTGAGTCTCTTTGGATTCATAACTCTGACCCTGTTTCTTTTCAAGGTTCAAAACAAGTGGTTGATTTTGAGAATGTTAGTGGCAGAGACAGGCCCTTCTTCCAAGCACTTGACAAGGAAGATAACTGTGATGAGGACTATGACACATGCTTTCATCAACCTGGTAAGAAAAGGAGGCTCACAAGTGAACAAGTTCAGTTTCTTGAAAGGAACTTTGAGGTAGAAAACAAGCTTGAACCTGAAAGAAAGGTTCAACTTGCAAAAGAGCTTGGCTTGCAGCCAAGACAAGTAGCTATATGGTTTCAAAACAGAAGGGCAAGGTTCAAGACCAAACAGCTTGAAAAAGAGTATGGCACATTGAAAGCTAGCTTTGATAGACTCAAAAGTGACTATGAAAATCTTCTTCAAGAAAACCAGAAGTTAAAAGATGAGGTGAATTCAGTGAAGAACAAATTGATTCCAAGAGATAAAGATAAAGAGAATTCAGATGACAAGTCATTCTCCAATGGTGCTGTCAACTCAATCCTCCACCAAGAGGAGCCTATTATGGATTTAATATCATCAAATGCAATATCTGAAAATGGGTCCAAAGTGCCACTCCCTATTATGGTAACATGCAAAATAGAAGATGCTAATTCAGCCAAAAGTGATGTGCTTGATTCTGATAGCCCACATTGCATTGAGGATGGAAACAACAACCCTTCCTCATTTGTTATGGATCCAGCTACTGATTCCTCTCATGCTTTTGAACCAGATCACTCAGATTTCTCACAAGATGATGAAGATGACCTTAGTGAAAAACTTTTGACCCTCCCTTGTTTACCAAAGATTGAAGATGCTTGTTATGATCATAATCCTGAACACTCTTGTAACTTTGGGTTCCCAGTTGAAGATCAAACCTTTTGTTTCTGGCCTTACTGA 1002 0.3972 MASGKLYGGPNMTVLHQNERLPRSSELLESLWIHNSDPVSFQGSKQVVDFENVSGRDRPFFQALDKEDNCDEDYDTCFHQPGKKRRLTSEQVQFLERNFEVENKLEPERKVQLAKELGLQPRQVAIWFQNRRARFKTKQLEKEYGTLKASFDRLKSDYENLLQENQKLKDEVNSVKNKLIPRDKDKENSDDKSFSNGAVNSILHQEEPIMDLISSNAISENGSKVPLPIMVTCKIEDANSAKSDVLDSDSPHCIEDGNNNPSSFVMDPATDSSHAFEPDHSDFSQDDEDDLSEKLLTLPCLPKIEDACYDHNPEHSCNFGFPVEDQTFCFWPY 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g0871 333 MobiDBLite consensus disorder prediction 253 269 - -
Lal6g0871 333 Pfam Homeodomain 83 136 IPR001356 GO:0003677
Lal6g0871 333 Gene3D - 68 139 - -
Lal6g0871 333 ProSitePatterns 'Homeobox' domain signature. 113 136 IPR017970 GO:0000981|GO:0006355
Lal6g0871 333 PANTHER HOMEOBOX LEUCINE ZIPPER FAMILY PROTEIN 1 333 - -
Lal6g0871 333 PRINTS Lambda-repressor HTH signature 109 118 IPR000047 GO:0003677
Lal6g0871 333 PRINTS Lambda-repressor HTH signature 118 134 IPR000047 GO:0003677
Lal6g0871 333 SUPERFAMILY Homeodomain-like 72 140 IPR009057 -
Lal6g0871 333 MobiDBLite consensus disorder prediction 244 288 - -
Lal6g0871 333 ProSiteProfiles 'Homeobox' domain profile. 78 138 IPR001356 GO:0003677
Lal6g0871 333 CDD homeodomain 81 139 IPR001356 GO:0003677
Lal6g0871 333 SMART HOX_1 80 142 IPR001356 GO:0003677
Lal6g0871 333 Coils Coil 151 178 - -
Lal6g0871 333 Pfam Homeobox associated leucine zipper 138 179 IPR003106 GO:0006355|GO:0043565
Lal6g0871 333 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 333 IPR045224 GO:0003700
Lal6g0871 333 Gene3D - 140 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal6g0871 Lal-Chr6 5958875 5961372 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal6g0871 22 179 Homeobox Transcription Factor Family AT3G01470 50.314 1.17e-42 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lal6g0871 Homeodomain 4e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal6g0871 - K09338 adu:107489132 410.223
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal6g0871 6 5958875 5961372 Lal6g0871 6 5958875 5961372 ECH