Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g0867 ATGGGAAAATTGAACAGCTTCTTTGTTTTCTTATGTTTTATGGTGATCATACCTAGTTTTGATGCCAATGTGAAAGAGAGTGAGGGTTACTTGCAAGAACATATGAAGACATTGGAATTGGATGCATATTGGCAAGAAAAAGCAGTAGTTGCTGAAAAGGTTAATAAAGCAGCTTTTTTTCCTGACCCATATGCACTCTCTGGAAACCTCACCTCTAGTGTTAGCGAAATTATAGTTGGCAAGAAAGGACGTAGGAATTTGAAGGGACAAAAGAAAGGTTCATGCATGGCGACCAATCCCATAGACAGGTGTTGGAGATGTAACCCAAATTGGGAAAAGAACCGGAAAAAGCTTGCAGATTGTGTGCAAGGTTTTGGAAGAGAGACAATTGGTGGAAAGGGTGGTCCAATCTATGTGGTTACTGATTCCTCAGACAGTGACATGTTGAATCCAAAACCAGGTACCATTCGCCATGCAGTCACAAGAAATGGACCATTATGGATCATCTTTAAACATAGCATGGTCATTAGGCTCAACCAAGAACTCATAATGACTAGTGACAAGACCATTGATGGAAGAGGAGCTGATGTTCATATTGCTGCTGGGGCTGGCTTTACAATTCAGTATATCAAGAATGTGATCATACATGGGATTAAAATTCATAACATTGTGGTTGGAAGTGGTGGACTTCTTAGAGATTCTGAGAACCATTTTGGTTTCAGGACCATGAGTGATGGTGATGGAATATCTATATTTGGATCTAGCAATGTTTGGATTGACCATGTTTCCATGAGAAAATGCCAAGATGGTTTGATAGATGTTGTTATGGGATCCACTGCTGTTACCATCTCCAATAGCCATTTCACAGATCACAATGAGGTGATGTTGTTTGGTGCAAGTGATAGCTTCTCAGGAGATCAAATAATGCAAGTCACTTTAGCATTCAACCACTTTGGTAAGAGATTAATCCAAAGGATGCCAAGGTGCAGATGGGGATTTATCCATGTTGTTAACAATGACTACACTCATTGGGAAATGTATGCCATTGGTGGTAGCAAGCACCCAACCATTATTAGTGAGGGTAACAGATTCATAGCCCCTAATAACTTAAATGCTAAAGAGATAACAAAGAGAGATTATTCAACAGAAGAAGTTTGGAAGAATTGGCAATGGAGATCAATAAATGATGAGTGTATGAATGGAGCATTTTTCAGACAAGCAGGACCAGTTCTAAGTAACAGACCATTCTCAAGGAAGGACATGATTTCAGCTAGGCCTGGTTCATATGTAGGAAGGCTTACTCGTTATGCTGGAAGCATTAGATGTAGAGTGGGAAAGCCTTGTTAA 1347 0.3987 MGKLNSFFVFLCFMVIIPSFDANVKESEGYLQEHMKTLELDAYWQEKAVVAEKVNKAAFFPDPYALSGNLTSSVSEIIVGKKGRRNLKGQKKGSCMATNPIDRCWRCNPNWEKNRKKLADCVQGFGRETIGGKGGPIYVVTDSSDSDMLNPKPGTIRHAVTRNGPLWIIFKHSMVIRLNQELIMTSDKTIDGRGADVHIAAGAGFTIQYIKNVIIHGIKIHNIVVGSGGLLRDSENHFGFRTMSDGDGISIFGSSNVWIDHVSMRKCQDGLIDVVMGSTAVTISNSHFTDHNEVMLFGASDSFSGDQIMQVTLAFNHFGKRLIQRMPRCRWGFIHVVNNDYTHWEMYAIGGSKHPTIISEGNRFIAPNNLNAKEITKRDYSTEEVWKNWQWRSINDECMNGAFFRQAGPVLSNRPFSRKDMISARPGSYVGRLTRYAGSIRCRVGKPC 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g0867 448 Coils Coil 448 448 - -
Lal6g0867 448 PANTHER PECTATE LYASE 18-RELATED 4 448 IPR045032 GO:0030570
Lal6g0867 448 PANTHER PECTATE LYASE 4 448 - -
Lal6g0867 448 SUPERFAMILY Pectin lyase-like 82 442 IPR011050 -
Lal6g0867 448 Gene3D - 98 441 IPR012334 -
Lal6g0867 448 PRINTS Pollen allergen Amb family signature 121 138 IPR018082 -
Lal6g0867 448 PRINTS Pollen allergen Amb family signature 145 170 IPR018082 -
Lal6g0867 448 PRINTS Pollen allergen Amb family signature 181 197 IPR018082 -
Lal6g0867 448 PRINTS Pollen allergen Amb family signature 245 266 IPR018082 -
Lal6g0867 448 PRINTS Pollen allergen Amb family signature 325 344 IPR018082 -
Lal6g0867 448 PRINTS Pollen allergen Amb family signature 347 366 IPR018082 -
Lal6g0867 448 PRINTS Pollen allergen Amb family signature 389 413 IPR018082 -
Lal6g0867 448 PRINTS Pollen allergen Amb family signature 419 442 IPR018082 -
Lal6g0867 448 SMART amb_all 173 370 IPR002022 -
Lal6g0867 448 Pfam Pectate lyase 183 364 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal6g0867 Lal-Chr6 5898245 5900861 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal6g0867 2 448 Polysaccharide Lyase AT3G01270 52.893 0.0 522
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal6g0867 K01728 - gmx:100796307 714.146
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal6g0867 6 5898245 5900861 Lal6g0867 6 5898245 5900861 ECH
Lal6g0867 6 5898245 5900861 Lal14g1922 14 18499005 18500855 ECH
Lal6g0867 6 5898245 5900861 Lal12g1452 12 17767855 17770227 ECH
Lal6g0867 6 5898245 5900861 Lal24g1396 24 15344449 15346195 ECH