Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g0857 ATGAATATGGCTTTTTTCCCAACAAATTTCATGCTACAAAACCCTCACCATGATGATCACCAACCTCCACCTTCACTCAACTCAATATTACCAACATGTACACCTCAAGATTATCATGGGGGACCATCTTTTCTAGGGAAGAGATCCATGTCATTTTCAGGGATTGAACTTGAAGAAGAAGTTAATGCTGAGGAAGATTTCTCTGATGATGGATCACAAGTAGGGGAGAAGAAAAGGAGGCTTAACATAGAACAAGTGAAGACACTTGAGAAGAGTTTTGAGCTTGGAAACAAGCTTGAACCTGAGAGAAAAATGCACCTGGCAAGGGCTCTTGGATTGCAACCTAGACAGATTGCTATATGGTTCCAGAACAGGAGGGCTAGGTGGAAGACAAAACAGTTGGAGAAAGACTATGATCTTCTTAAAAGACAATATGATGCTATGAAGTCTGATAATGATGCACTTCAAGCTCAGAACCAAAAACTTCAAGCTGAGATATTGGCACTGAAAAGTAGAGAACCAACTGAATCCATCAACCTGAACAAAGAAACAGAAGGGTCATGCAGCAATAGGAGTGAGAACAGTTCAGAAATAAAGTTGGATATATCAAGAACACAAGCTATTGATAGTCCTATATCCCCACATCTCAAAAGCAGACCCTTATTTCCATCATCTTCTGCTATTAGGCCTACATCAGTGACTCAACTTATCCAAATTGCTTCAAGACCTGAAGTCCAATGCCAAAAGATTGATCAAATTGCCAAAGAGGAGAGTTTAAGTTCAATGTTTTGTGGCATGGATGACCAATCTGGGTTCTGGCCATGGTTGGAGCAGCAACATTTCAATTGA 849 0.4028 MNMAFFPTNFMLQNPHHDDHQPPPSLNSILPTCTPQDYHGGPSFLGKRSMSFSGIELEEEVNAEEDFSDDGSQVGEKKRRLNIEQVKTLEKSFELGNKLEPERKMHLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDLLKRQYDAMKSDNDALQAQNQKLQAEILALKSREPTESINLNKETEGSCSNRSENSSEIKLDISRTQAIDSPISPHLKSRPLFPSSSAIRPTSVTQLIQIASRPEVQCQKIDQIAKEESLSSMFCGMDDQSGFWPWLEQQHFN 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g0857 282 MobiDBLite consensus disorder prediction 177 196 - -
Lal6g0857 282 MobiDBLite consensus disorder prediction 180 196 - -
Lal6g0857 282 ProSiteProfiles 'Homeobox' domain profile. 72 132 IPR001356 GO:0003677
Lal6g0857 282 Gene3D - 69 138 - -
Lal6g0857 282 Pfam Homeobox associated leucine zipper 132 172 IPR003106 GO:0006355|GO:0043565
Lal6g0857 282 Coils Coil 124 172 - -
Lal6g0857 282 Pfam Homeodomain 77 130 IPR001356 GO:0003677
Lal6g0857 282 PRINTS Lambda-repressor HTH signature 103 112 IPR000047 GO:0003677
Lal6g0857 282 PRINTS Lambda-repressor HTH signature 112 128 IPR000047 GO:0003677
Lal6g0857 282 SUPERFAMILY Homeodomain-like 70 134 IPR009057 -
Lal6g0857 282 CDD homeodomain 77 133 IPR001356 GO:0003677
Lal6g0857 282 ProSitePatterns 'Homeobox' domain signature. 107 130 IPR017970 GO:0000981|GO:0006355
Lal6g0857 282 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 3 282 IPR045224 GO:0003700
Lal6g0857 282 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-13 3 282 - -
Lal6g0857 282 SMART HOX_1 75 136 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal6g0857 Lal-Chr6 5810925 5813052 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal6g0857 3 282 Homeobox Transcription Factor Family AT1G69780 61.565 1.95e-116 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lal6g0857 Homeodomain 3.2e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal6g0857 K09338 - gmx:100814080 474.937
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal6g0857 6 5810925 5813052 Lal6g0857 6 5810925 5813052 ECH
Lal12g1449 12 17733946 17737719 Lal6g0857 6 5810925 5813052 PCT
Lal6g0857 6 5810925 5813052 Lal12g1449 12 17733946 17737719 PCT