Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g0855 ATGTCTAATAGAAGATCTCGTTCTAGACAATCTGGTGGTTCAGCTGAGATCACTGATGCTCAAATCACAGATCTCGTTTCCAAGTTACAACAACTTATCCCTGAGCTTCGAGCTAGACGCTCCGACAAGGTTTCCTCTGCTAAGGTATTGCAAGAAACTTGCAACTACATCAAGAACTTGCACAGAGAGGTTGATGATCTAAGTGACCGGTTGTCACAACTTTTGGCCAACACAGACTCCAATAGTCCTCAAGCAGCCATTATTAGGAGCTTACTTATGTAA 282 0.4291 MSNRRSRSRQSGGSAEITDAQITDLVSKLQQLIPELRARRSDKVSSAKVLQETCNYIKNLHREVDDLSDRLSQLLANTDSNSPQAAIIRSLLM 93
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g0855 93 Coils Coil 57 77 - -
Lal6g0855 93 Pfam Helix-loop-helix DNA-binding domain 21 60 IPR011598 GO:0046983
Lal6g0855 93 PANTHER TRANSCRIPTION FACTOR PRE6 1 93 - -
Lal6g0855 93 Gene3D - 19 88 IPR036638 GO:0046983
Lal6g0855 93 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 6 60 IPR011598 GO:0046983
Lal6g0855 93 CDD bHLH_AtPRE_like 17 77 - -
Lal6g0855 93 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 21 84 IPR036638 GO:0046983
Lal6g0855 93 PANTHER TRANSCRIPTION FACTOR PRE 1 93 IPR044293 GO:0006355|GO:0040008|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal6g0855 Lal-Chr6 5793642 5795462 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal6g0855 1 93 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G47710 67.021 1.32e-34 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lal6g0855 HLH 5.2e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal6g0855 - - gmx:100816720 164.466
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal6g0855 6 5793642 5795462 Lal6g0855 6 5793642 5795462 ECH
Lal6g0855 6 5793642 5795462 Lal14g1919 14 18474373 18475557 ECH
Lal6g0855 6 5793642 5795462 Lal12g1447 12 17711612 17713767 ECH
Lal6g0855 6 5793642 5795462 Lal24g1387 24 15272036 15273985 ECH
Lal12g1447 12 17711612 17713767 Lal6g0855 6 5793642 5795462 PCT
Lal24g1387 24 15272036 15273985 Lal6g0855 6 5793642 5795462 PCT
Lal6g0855 6 5793642 5795462 Lal12g1447 12 17711612 17713767 PCT
Lal6g0855 6 5793642 5795462 Lal24g1387 24 15272036 15273985 PCT