Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g0841 ATGAGCGATCATTTGGTTCTCTTCGTTGACCGTCTTCTGTGCCCTGTCCCCGTTGACCCTGTCGCACAACCTCCTCAGCTCCCTTCCGATCCCTCACCTTCTCCGCCGCCGTCTCAGGCCGAGGATGCCGTTGCCGGACCCTCGGAATCGGCTCCGCCGGTGAATCATGATGACGAAGCCGAATCGGAGAACGGCGAGGGTGGTGATGAGGAGGATCCGCTGATCCAGATGGGGGAGTGCCGCATTTGCCAGGAGGAGGACGGAGTCTCCAATTTGGAGAGCCCCTGCGCCTGTAGCGGGAGCCTCAAGTATGCTCACAGAAAGTGTGTCCAACATTGGTGCAATGAGAAAGGAGACATTACCTGTGAGATATGTCATCAGCCTTATCAATCTGGATATACTGCCCCACCGCCTCGTCTTAATCCTGATGAAACTACCATTGATATAGGAGGCTGGACAATATCTGGCACACCTTTAGACTTGAGTGATCCTCGACTCTTGGCAATTGCAGAGGCAGAACGTCAATTCTTGGACGCTGAATATGATGAGTATGCTGCTTCTAATGCCAGTGGAGCTGCATTTTGCCGCTCAGCTGCTCTAATTTTAATGGCCCTTTTAATCTTGCGACATGCACTCTCTGTCACTGATGGTGGTGATTCTTCCGAAGATGACCCATCCAATTTTTTCTCTCTTTTCTTGCTTCGAGCTGCTGGATTTCTTTTACCTTGCTATATTATGGCTTGGGCAATCAGTGTCCTGCAACGTCGGCGTCAAAGACAAGAGGCTGCAGCTCTAGCAGCAACGCAAGTTGCTTTTGTTCTACAATCTGGGCAGCGTAGGGGTCTACAATTTGGAATTCCACCTGGACCCACAGTGCACCCAGAACAAGCTTAG 894 0.5145 MSDHLVLFVDRLLCPVPVDPVAQPPQLPSDPSPSPPPSQAEDAVAGPSESAPPVNHDDEAESENGEGGDEEDPLIQMGECRICQEEDGVSNLESPCACSGSLKYAHRKCVQHWCNEKGDITCEICHQPYQSGYTAPPPRLNPDETTIDIGGWTISGTPLDLSDPRLLAIAEAERQFLDAEYDEYAASNASGAAFCRSAALILMALLILRHALSVTDGGDSSEDDPSNFFSLFLLRAAGFLLPCYIMAWAISVLQRRRQRQEAAALAATQVAFVLQSGQRRGLQFGIPPGPTVHPEQA 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g0841 297 CDD RING_CH-C4HC3_MARCH 80 126 - -
Lal6g0841 297 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 67 136 IPR013083 -
Lal6g0841 297 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MARCH-RELATED 1 288 - -
Lal6g0841 297 MobiDBLite consensus disorder prediction 18 40 - -
Lal6g0841 297 ProSiteProfiles Zinc finger RING-CH-type profile. 72 132 IPR011016 GO:0008270
Lal6g0841 297 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 1 288 IPR033275 -
Lal6g0841 297 MobiDBLite consensus disorder prediction 18 73 - -
Lal6g0841 297 Pfam RING-variant domain 80 125 IPR011016 GO:0008270
Lal6g0841 297 SUPERFAMILY RING/U-box 79 130 - -
Lal6g0841 297 Coils Coil 167 187 - -
Lal6g0841 297 SMART ringv_2 79 126 IPR011016 GO:0008270
Lal6g0841 297 Pfam Protein of unknown function (DUF3675) 132 250 IPR022143 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal6g0841 Lal-Chr6 5679684 5683882 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal6g0841 79 125 C3H Transcription Factor Family AT2G37950 46.000 1.38e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal6g0841 - - lang:109359054 499.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal6g0841 6 5679684 5683882 Lal6g0841 6 5679684 5683882 ECH