Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g0828 ATGGTTATGATTTGTAGGATGGGCAGGGTAAAGCTAAAGATAAAGAAATTGGAGAACACCAATGGGCGTCAAGCAACATATGCTAAAAGAAAGAATGGAATCATTAAGAAAGCTTCTGAGTTATCTATACTCTGTGATATTGATATTATACTTCTCATGTTCTCACCAACTGGAAAACCTTCATTATGTTGGGGAAGGCGCAGTAACTTTGAGGAGATTATGACAAAGTTTGCTCAAATGACTCCACAGGAAAGGGCAAAAAGGAAGCTAGAGAGTCTTGAAGCACTGAAGAAAACTTTTAAGAAGTTAGATCATGATGTAAATGTACAAGAATTTTTGGGTACAAGTAATCAAACTATTGAGGACCTAAGTAATCAATCCAGGCAATTACAGACTTTGATTTCTGACAGAAACAAGAGACTAAGCCATTGGACTGACCTTAGTAAAATCAGTAATTCTGAAAAACTGGAACAAATGGAAAATTCACTAAGGGAGTCACTTAATCAAATTCGAACTCGTAAGCAAAATATCCAAAAGCAACAACTTGAATCACTGCAATGCAATAATAACCAGTTCAATGAAATGCATATTCCCTTCACAATGAGTGCTGACCAGCATCTCCAACCTCTGTCATGGATTGCTAATGGTGACAGCCAAAATATGGTTTTACATGAGGACTCAAATTTGCTTCTCCATAGAGATGTAGAGGGCTCTGCAAGCTCCTCATTTGGAACTTATGCAAGTTATCTTGGATCGAGTACGAAAACCGATATTTCTAATTCCGGGCAAGAAAATGGTGTTCTTAGTGACTTGAGCAGCAATGCTCCTGTGAGACTAGAATTAAATGGACAGTTTCCATGCCAACCATACAATTTTAATATACTGAATGATATAAAGTTCCAACTAGAAGCAGAGATGAATCCACATGAAAACCATGTAGATTATCATGTCAATGGAAGATTAGAACCACCAAGGCCTGATTATGAGTCTAACCACCACAATTGGACTTCCACATCAGGGCCTTGTGCTGTTACTATGCTTGATGAGTATTTGCTTAGCCAGACCAGTTTTCCTCAGGTGCATTTCGGCTTCACATAA 1098 0.3807 MVMICRMGRVKLKIKKLENTNGRQATYAKRKNGIIKKASELSILCDIDIILLMFSPTGKPSLCWGRRSNFEEIMTKFAQMTPQERAKRKLESLEALKKTFKKLDHDVNVQEFLGTSNQTIEDLSNQSRQLQTLISDRNKRLSHWTDLSKISNSEKLEQMENSLRESLNQIRTRKQNIQKQQLESLQCNNNQFNEMHIPFTMSADQHLQPLSWIANGDSQNMVLHEDSNLLLHRDVEGSASSSFGTYASYLGSSTKTDISNSGQENGVLSDLSSNAPVRLELNGQFPCQPYNFNILNDIKFQLEAEMNPHENHVDYHVNGRLEPPRPDYESNHHNWTSTSGPCAVTMLDEYLLSQTSFPQVHFGFT 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g0828 365 CDD MADS 8 60 - -
Lal6g0828 365 Coils Coil 83 103 - -
Lal6g0828 365 Coils Coil 153 180 - -
Lal6g0828 365 PANTHER SERUM RESPONSE FACTOR HOMOLOG 7 355 - -
Lal6g0828 365 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 17 60 IPR002100 GO:0003677|GO:0046983
Lal6g0828 365 ProSiteProfiles MADS-box domain profile. 7 59 IPR002100 GO:0003677|GO:0046983
Lal6g0828 365 SUPERFAMILY SRF-like 8 101 IPR036879 GO:0003677|GO:0046983
Lal6g0828 365 Gene3D - 20 103 IPR036879 GO:0003677|GO:0046983
Lal6g0828 365 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL65 ISOFORM X1 7 355 - -
Lal6g0828 365 PRINTS MADS domain signature 9 29 IPR002100 GO:0003677|GO:0046983
Lal6g0828 365 PRINTS MADS domain signature 29 44 IPR002100 GO:0003677|GO:0046983
Lal6g0828 365 PRINTS MADS domain signature 44 65 IPR002100 GO:0003677|GO:0046983
Lal6g0828 365 SMART madsneu2 7 66 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal6g0828 Lal-Chr6 5581818 5584848 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal6g0828 7 358 Type I MADS-box Gene Family AT2G03060 46.597 6.45e-104 309
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lal6g0828 SRF-TF 2.1e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal6g0828 - - lang:109356063 614.379