Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g0792 ATGGCTAGAAAAGTTTTATCCTTTATACCCCAAAGACCCTTCTCTTCTATACCTGAAATTCCGAACCTTTATTCCTTCCTTCAACCTTCACTTTTTTCCCTTAGAACCACCAACCAACAAGAACAACCCCAAAAGCTCCCAACTTCTCCACCAAACTCTTTCAGCCAAGACCAAATCTCCACCTTTGAGACCATCCTTCACAAATCCATCATCACAAACAACACTGATGAGGCATGGAAGTCTTTCAAATCCATCACCACCCTTCACTCTTTCCCTCCAAAACCACTCACCAATTCCCTCATTACCCACCTTTCCTCTCACTCTGACCTTCACAACCTCAAGAGAGCATTCACCTCTGCTGTCTACATCATTGAGAAGAATCCTATGATGTTGGAGCTTGAAACTGTTGCCTCATTGCTTGAATCAATGAGGTGTGCCAACACTGCTGCCCCTGCTTTTGCCCTTGTCAAATGCATGTTCAAGAACAGGCTTTTTGTCCCGTTCGGCACGTGGGGTGGCGTGCTTGCTGAGATTGGTAGGAAGAATGGTAACCTTGTTGCTTTCTTAAGGGTTTTTGAGGAGAATTGTAGGATTTGTTTGGATGAAAAGGTTGAGTCTATGAAACCTGATGTTGGTGCTTGTAATGCAGCCTTGGAAGGTTGCTGTTGTGAGCTTCAATCTGTGAGTGATGCTGAGAGGGTTGTTGAAATAATGTCCAATTTGGGTGTTAGACCAAATGAATTGAGTTTTGGGTTTCTTGGTTATTTGTATGCACTGAAGGGGTTTCAAGATAAGATAGATGAGTTAAAAATTTTGATGGGTGGTTTTGGCTACTCAAATAAAAAGAGTTTTTATTCTAATTTGATTAGTGGGTATGTTAAGTCAGGTAATTTAGCTTCTGTTGAGTCGACTATTCTCAGTAGTTTGAATGATGTAGATGGCAAAGATTGGAATTTTGGTGAAGAAACTTTCTGTGGAGTAGTTAAGGAATACCTTCATAGGGGTAATATCAAGGGGTTAGCTAATTTGATTATTGAAGCTCAGAAGTTAGAACCTTCGAATATTGAAGTTGGTCAATCTATAGGTTATGGTATTGTTAATGCATGTGTAAGTATTGGACTATCAGACAAAGCACACAGCATTCTCGATGAAATGAATGCTCTGGTAGGCTCTGTCGGTCTCGGGGTCTATGTGCCAATCTTGAAGGCTTACTGCAAAGAAAATCGAACAGCGGAGGCTACTCTATTGGTGGCAGAGATTAGTGGTTCAGGTCTTCGGTTGGATGTGGAAACCTATGAGTCTTTGATAGAAGCATCCATGTCCAGCCAAGATTTTCAGTCAGCCTTTTCAATGTTTAGGGACATGAGAGAGGCTAGGGTTCCTGAGTTGAAAGGGAGTTACTTAACTATCATGACCGGTTTGATGGAGAATCATCGACCTGAGTTGATGGCAGCTTTCTTAGATGAGGTGGTTGAAGATCCACGGATCGAAGTTGGCACTCATGACTGGAGCTCTATCATCCATGCTTTCTGTAAAGCCGGGAGACTAGAAGATGCAAGAAGAACTTTCAGACGGATGACATTCCTGCAATTTGAGCCAAATGATCAGACATACTTGTCCATGATTAATGGTTATGTCTCGGCAGGGAAATATTTTAGTGTGCTGATGTTATGGAATGAGGTTAGGCGAAAGCTATCCGAAGATGAGCAGAAGGGGATCAAATTTGACCAAAATCTGGTTGATGCATTCCTGTATGCTTTGGTCAAAGGAGGTTTCTTTGATGCAGTTATGCAAGTTGTGGAGAAATCTAATGAGAAGAAAATATTTGTTGATAAGTGGAAATACAAGCAAGCATTCATGGAGACCCATAAAAAGCTCAGAGTGGCAAAGTTAAGAAAAAGAAATTTCAGAAAAATGGAAGCACTTATTGCTTTTAAGAATTGGGCTGGCTTAAATACATGA 1962 0.4118 MARKVLSFIPQRPFSSIPEIPNLYSFLQPSLFSLRTTNQQEQPQKLPTSPPNSFSQDQISTFETILHKSIITNNTDEAWKSFKSITTLHSFPPKPLTNSLITHLSSHSDLHNLKRAFTSAVYIIEKNPMMLELETVASLLESMRCANTAAPAFALVKCMFKNRLFVPFGTWGGVLAEIGRKNGNLVAFLRVFEENCRICLDEKVESMKPDVGACNAALEGCCCELQSVSDAERVVEIMSNLGVRPNELSFGFLGYLYALKGFQDKIDELKILMGGFGYSNKKSFYSNLISGYVKSGNLASVESTILSSLNDVDGKDWNFGEETFCGVVKEYLHRGNIKGLANLIIEAQKLEPSNIEVGQSIGYGIVNACVSIGLSDKAHSILDEMNALVGSVGLGVYVPILKAYCKENRTAEATLLVAEISGSGLRLDVETYESLIEASMSSQDFQSAFSMFRDMREARVPELKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRIEVGTHDWSSIIHAFCKAGRLEDARRTFRRMTFLQFEPNDQTYLSMINGYVSAGKYFSVLMLWNEVRRKLSEDEQKGIKFDQNLVDAFLYALVKGGFFDAVMQVVEKSNEKKIFVDKWKYKQAFMETHKKLRVAKLRKRNFRKMEALIAFKNWAGLNT 653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g0792 653 Pfam PPR repeat 285 301 IPR002885 -
Lal6g0792 653 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 210 245 IPR002885 -
Lal6g0792 653 TIGRFAM PPR: pentatricopeptide repeat domain 503 534 IPR002885 -
Lal6g0792 653 Pfam Pentatricopeptide repeat domain 416 460 IPR002885 -
Lal6g0792 653 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 428 462 IPR002885 -
Lal6g0792 653 Gene3D Tetratricopeptide repeat domain 363 463 IPR011990 GO:0005515
Lal6g0792 653 Gene3D Tetratricopeptide repeat domain 464 625 IPR011990 GO:0005515
Lal6g0792 653 PANTHER OS01G0788900 PROTEIN 3 653 - -
Lal6g0792 653 Pfam PPR repeat family 503 546 IPR002885 -
Lal6g0792 653 Gene3D Tetratricopeptide repeat domain 56 361 IPR011990 GO:0005515
Lal6g0792 653 PANTHER BNAC05G43320D PROTEIN 3 653 - -
Lal6g0792 653 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 499 533 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal6g0792 365 639 Miscellaneous Gene Families AT4G11690 20.364 1.91e-09 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal6g0792 - - mtr:MTR_5g044930 977.622
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal6g0792 6 5328264 5330225 Lal6g0792 6 5328264 5330225 ECH