Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g0774 ATGAACCACGAGGAGAAAGTCACCATGGACCTTATTTCACCTTCTGAGCATCTCTGCTACGTCCGTTGCAACTTCTGTAACACTGTTCTTGCGGTTGGGATCCCATGCAAGAGGTTGCTAGACACTGTGACAGTGAAGTGTGGACACTGCAGCAACCTATCCTTTCTCAGTACCAGACCCCCATATTCTCCTCAAACCCAAACCATTGATCACACACTGAGTCTCCAGCTGCAAGAATCTCCTTGTATATTCAAGCAGGGGTTTTACAGTGATACCAAAAAGGGTCATGCATCATCTTCATCACCAACTACATCAAACGAGTCAATTTCCCCTAAAGCAGCACCATTTGTTGTGAAACCACCTGAGAAGAAGCACCGCCTCCCATCTGCTTACAACCGTTTCATGAAAGATGAGATACAACGCATCAAAGCAGCTAACCCTGAGATCCCGCATCGTGAAGCTTTCAGCGCTGCTGCCAAAAATTCTTTAGGGTTAACACCCTTGTCATGCCCTTTTTTAGGGTTTTCCTCTGATATTAATTAG 543 0.4567 MNHEEKVTMDLISPSEHLCYVRCNFCNTVLAVGIPCKRLLDTVTVKCGHCSNLSFLSTRPPYSPQTQTIDHTLSLQLQESPCIFKQGFYSDTKKGHASSSSPTTSNESISPKAAPFVVKPPEKKHRLPSAYNRFMKDEIQRIKAANPEIPHREAFSAAAKNSLGLTPLSCPFLGFSSDIN 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g0774 180 MobiDBLite consensus disorder prediction 94 111 - -
Lal6g0774 180 Gene3D High mobility group box domain 90 162 IPR036910 -
Lal6g0774 180 CDD HMG-box 126 153 - -
Lal6g0774 180 Pfam YABBY protein 14 161 IPR006780 GO:0007275
Lal6g0774 180 PANTHER PROTEIN CRABS CLAW 6 164 - -
Lal6g0774 180 MobiDBLite consensus disorder prediction 94 117 - -
Lal6g0774 180 PANTHER PROTEIN YABBY 6-RELATED 6 164 IPR006780 GO:0007275
Lal6g0774 180 SUPERFAMILY HMG-box 110 159 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal6g0774 Lal-Chr6 5192971 5194376 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal6g0774 1 167 C2C2-YABBY Transcription Factor Family AT1G69180 62.353 3.27e-58 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Lal6g0774 YABBY 6.3e-54 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal6g0774 K25796 - gmx:100819079 266.544
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal6g0774 6 5192971 5194376 Lal6g0774 6 5192971 5194376 ECH
Lal22g0683 22 4862557 4869523 Lal6g0774 6 5192971 5194376 LSH