Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g0731 ATGTCGTTTTGCTCCAATATTGAATATTTACTGCAGGAACCCATGCCTCCAAGTTTCAACACACTTGACTACTCTCTTGATAATCACAACCATAACCATCTTTATCCACAACAAAATCTCATGAAGTTTCAAATAGGCGAAAGTTCAGGCAGAAACGACAATGTTATGGTGGATTACATGCCTCAACCACCACCACCACCACCACAAATTTCACCATCAGGGTTTTATGGTGCAACTAGTTTTGATAAACTGAGTTTTGCAGACGTGATGCAGTTTGCAGATTTCGGACCCAAGTTGGCCTTAAATCAAGCCAAGACTTGCGAAGAAACCGGAATTGACCCGGTTTACTTCCTCAAGTTTCCAGTCTTAAATGACAAAATGGAAGACAAAAATTTGATGGAGATCAACACAGAAGCTGGTGATGGAGAAGCACAAAATGATGATGAGAAATTCAATATGGTAAGTGTGGAAGATAAGGCAAGAGCTGGTGTAAGTGAAGAAGAATGGGGAATAATTAGAGATGAAGAAACTCGAGTTTCTGATGACCACAACTCAGTTCAGATTCGGTATCTTGGCCATGAAGAACTCCAGAATAATAACTCTACAGTGCAGGAGAACAAGAACAAGAGGAAGAGGCCAAGAACCGTGAAGACAAGTGAAGAAGTTGAGAGTCAGCGCATGACTCACATAGCAGTTGAAAGGAACCGAAGGAAGCAAATGAATGAGCATCTTCGTGTCCTCAGATCCCTCATGCCTGGTTCATACGTGCAAAGGGGTGATCAAGCTTCTATTATCGGGGGAGCAATAGAGTTTGTGAGGGAATTGGAGCAACTTCTACAATGCTTGGAATCACAAAAGAGGAGAAGAATACTTGGAGAAGATCAATCAAGACAAGTTGGTGATCCAGTTCTTGCAATGCAACAACCTATTCAGCCACCATTTTGTCCACCTTTTCCCAATGACCAGATGAAGCTCGTTGAATTAGAGACTGGACTTCAGGAAGAAATCGCGAAGAGTAAATCTTGTTTGGCTGATGTAGAAGTGAAGCTTCTTGGATTTGATGCCATGATCAAAATCCTATCAAGGAGGAGGCCAGGACAGTTGATCAAGATCATTGCTGCACTTGAAGATCTCCAACTAATTATCCTTCACACTAACATCACCACCATTGAACAAACAGTTCTTTATTCATTCAATGTTGAGGTGGCTAGTGATTCAAGGTTCACCGCAGAAGATATAGCCAGCTCCGTTCAGCAGATATTCAGTTTTATCCATGCAAACACTAGCATGTGA 1293 0.4176 MSFCSNIEYLLQEPMPPSFNTLDYSLDNHNHNHLYPQQNLMKFQIGESSGRNDNVMVDYMPQPPPPPPQISPSGFYGATSFDKLSFADVMQFADFGPKLALNQAKTCEETGIDPVYFLKFPVLNDKMEDKNLMEINTEAGDGEAQNDDEKFNMVSVEDKARAGVSEEEWGIIRDEETRVSDDHNSVQIRYLGHEELQNNNSTVQENKNKRKRPRTVKTSEEVESQRMTHIAVERNRRKQMNEHLRVLRSLMPGSYVQRGDQASIIGGAIEFVRELEQLLQCLESQKRRRILGEDQSRQVGDPVLAMQQPIQPPFCPPFPNDQMKLVELETGLQEEIAKSKSCLADVEVKLLGFDAMIKILSRRRPGQLIKIIAALEDLQLIILHTNITTIEQTVLYSFNVEVASDSRFTAEDIASSVQQIFSFIHANTSM 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g0731 430 MobiDBLite consensus disorder prediction 195 221 - -
Lal6g0731 430 MobiDBLite consensus disorder prediction 205 221 - -
Lal6g0731 430 Gene3D - 215 289 IPR036638 GO:0046983
Lal6g0731 430 PANTHER TRANSCRIPTION FACTOR FAMA 39 430 - -
Lal6g0731 430 PANTHER TRANSCRIPTION FACTOR FAMA 39 430 IPR044283 GO:0003700|GO:0010052
Lal6g0731 430 CDD ACT_UUR-ACR-like 356 420 - -
Lal6g0731 430 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 224 275 IPR011598 GO:0046983
Lal6g0731 430 CDD bHLH_AtFAMA_like 227 293 - -
Lal6g0731 430 Pfam Helix-loop-helix DNA-binding domain 225 276 IPR011598 GO:0046983
Lal6g0731 430 SMART finulus 230 281 IPR011598 GO:0046983
Lal6g0731 430 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 224 290 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal6g0731 Lal-Chr6 4881231 4883905 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal6g0731 45 430 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G24140 61.463 2.43e-151 433
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lal6g0731 HLH 9.3e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal6g0731 - - pvu:PHAVU_003G033900g 579.326
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal22g0544 22 3663095 3667074 Lal6g0731 6 4881231 4883905 LSH