Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g0699 CGAAGAGTACTGTTAGTAATAATGGATCGAGAATGGGGTTCAAAGCCTGGGAGCGGTGGCGCCGCCACCGCACAAAACGAAGCCATCGACCGTCGAGAGCGTCTCCGGCGTCTAGCCCTGGAGACCATTGATCTCGCGAAGGATCCCTATTTCATGCGCAATCATCTTGGAAGCTATGAATGCAAGCTTTGTTTGACACTGCATAACAATGAGGGAAACTATTTGGCGCACACTCAGGGGAAACGCCATCAAACTAATTTGGCCAAACGTGCTGCTCGTGAGGCCAAGGATGCACCCGCTAATCCTCAACCTCACAAGCGTAATGTATCTGTTCGCAGAACAGTCAAGATTGGTCGGCCTGGGTACCGTGTGACTAAGCAATATGATCCAGAGACAAAGCAAAGATCTCTTCTATTCCAGATTGAGTATCCTGAGATTGAAGACCTCTCAAAGCCAAGGCACCGATTTATGTCTTCTTATGAGCAGAGGGTGCAACCATTTGATAAAAGTTACCAGTATCTTTTGTTTGCAGCTGAACCATATGAAATAGTTGCTTTCAAGGTCCCTAGCACAGAGATTGATAAGTCCACTCCAAAGTTCTTCTCGCACTGGGACCCAGACTCAAAGATGTTCACACTTCAGTTGTATTTTAAAACCAAGCCACCAGAGGCAAACAAACCACAGCCTCCCACCATAACCAATGGCACAGAAGCACCTGGTGTTCCGCCAAGGCCTTTGGCCCCGTCGCCCCAAGCTCCACCACCACCACCTCCACAAGGACTTCCTCCTGGTGCACCTATGGGAAATCCTCCCAGAGCTCCTCCACCTCCGATGTCGGGATCATTTCCACCTCCTCCTCCAATGGCAGCAAATGGTCCTAGACCAGCACCTCCTGGTGGAATGCCATCTATCCCACCCCCACCCCCCTCAACAGCCAATTTCAACATGGGTAACAGGCCTCCATCAATGCCTCCTCCTCCACAAGGTTTTCTCGGCCAACAAATGCAGGGTCACGGTCTCCGTCCGCCTCCACCACCCCCGAATATGGGACAATAG 1056 0.5104 RRVLLVIMDREWGSKPGSGGAATAQNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTLHNNEGNYLAHTQGKRHQTNLAKRAAREAKDAPANPQPHKRNVSVRRTVKIGRPGYRVTKQYDPETKQRSLLFQIEYPEIEDLSKPRHRFMSSYEQRVQPFDKSYQYLLFAAEPYEIVAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLYFKTKPPEANKPQPPTITNGTEAPGVPPRPLAPSPQAPPPPPPQGLPPGAPMGNPPRAPPPPMSGSFPPPPPMAANGPRPAPPGGMPSIPPPPPSTANFNMGNRPPSMPPPPQGFLGQQMQGHGLRPPPPPPNMGQ 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g0699 351 ProSiteProfiles Zinc finger matrin-type profile. 59 89 IPR000690 GO:0003676|GO:0005634|GO:0008270
Lal6g0699 351 Gene3D - 101 225 - -
Lal6g0699 351 Gene3D Classic Zinc Finger 53 96 - -
Lal6g0699 351 SMART CactinC_cactus_3 96 224 - -
Lal6g0699 351 SMART ZnF_U1_5 56 90 IPR003604 GO:0003676|GO:0008270
Lal6g0699 351 Pfam Pre-mRNA-splicing factor SF3a complex subunit 2 (Prp11) 117 211 IPR031781 -
Lal6g0699 351 MobiDBLite consensus disorder prediction 220 351 - -
Lal6g0699 351 SUPERFAMILY beta-beta-alpha zinc fingers 55 89 IPR036236 -
Lal6g0699 351 MobiDBLite consensus disorder prediction 241 328 - -
Lal6g0699 351 PRINTS Proline rich extensin signature 222 238 - -
Lal6g0699 351 PRINTS Proline rich extensin signature 246 258 - -
Lal6g0699 351 PRINTS Proline rich extensin signature 266 287 - -
Lal6g0699 351 PRINTS Proline rich extensin signature 291 307 - -
Lal6g0699 351 Pfam Zinc-finger of C2H2 type 59 83 - -
Lal6g0699 351 PANTHER SPLICING FACTOR 3A SUBUNIT 2 8 345 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal6g0699 Lal-Chr6 4594397 4596698 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal6g0699 8 300 C2H2 Transcription Factor Family AT2G32600 78.157 8.28e-140 396