Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g0667 ATGGTTTTTATCAAGGCTCAGAAATCTAGGGCTTACTTCAAGAGGTATCAAGTCAAGTTCAAGAGAAGAAGAGATGGCAAGACTGATTACCGTGCTAGGATTCGGTTGATTAACCAGGACAAGAACAAGTACAACACCCCAAAATATCGCTTTGTGACCAACAAGGACATCATTGCTCAAATAACATCTGCTAGTATCGCTGGTGATAATGTTCTTGCTGCAGCATATGCACATGAACTGCCACACTTTGGTCTGGAAGTAGGTCTTACCAACTATGCTGCAGCTTATTGCACTGGGCTTCTTCTCGCCCGCAGGGTCCTTAAGACACTTGAATTGGATGAGGAGTACGAGGGGAATGTAGAGGCTACCGGAGAGGATTATTCAGTTGAGCCTGCTGAGACCAGGAGACCATTCCGTGCCCTCCTTGATGTTGGTCTTATCAGGACCACCACTGGAAATCGTGTTTTCGGTGCCCTCAAGGGAGCTTTGGATGGGGGTTTAGATATTCCTCACAGTGACAAAAGGTTTGCTGGTTTTGATAAGGAGAAGAAGGAACTGGATCCTGAGACCCTGATCGAAGATGAACCTGAGAAATACCAAACACACTTCAGTGAATACATTAAGCGAGGAATAGAGTCTGATGGACTTGAGGCGCTGTACAAAAAGGTTCACGCAGCCATCCGTGCAGATCCCACTCCAAAGAAGTCTGACAAGCCCAAACCTAAGCAGCATAAGAGGTACAACCTGAAGAAGCTTACCTATGAGGAGAGGAAGAATAAGTTGATTGCACGATTGCAAGCTCTCAATTCCGCTGCTGATGTGGATGATGAGGACGACGAGTGA 843 0.4626 MVFIKAQKSRAYFKRYQVKFKRRRDGKTDYRARIRLINQDKNKYNTPKYRFVTNKDIIAQITSASIAGDNVLAAAYAHELPHFGLEVGLTNYAAAYCTGLLLARRVLKTLELDEEYEGNVEATGEDYSVEPAETRRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGFDKEKKELDPETLIEDEPEKYQTHFSEYIKRGIESDGLEALYKKVHAAIRADPTPKKSDKPKPKQHKRYNLKKLTYEERKNKLIARLQALNSAADVDDEDDE 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g0667 280 Pfam Ribosomal L18 C-terminal region 216 269 IPR025607 -
Lal6g0667 280 Gene3D - 1 272 - -
Lal6g0667 280 PRINTS Ribosomal protein L5 signature 20 39 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Lal6g0667 280 PRINTS Ribosomal protein L5 signature 81 101 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Lal6g0667 280 PRINTS Ribosomal protein L5 signature 141 160 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Lal6g0667 280 PRINTS Ribosomal protein L5 signature 161 180 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Lal6g0667 280 PANTHER RIBOSOMAL PROTEIN L5-RELATED 1 280 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Lal6g0667 280 CDD Ribosomal_L18_L5e 41 167 - -
Lal6g0667 280 Pfam Ribosomal large subunit proteins 60S L5, and 50S L18 14 172 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Lal6g0667 280 Coils Coil 251 271 - -
Lal6g0667 280 MobiDBLite consensus disorder prediction 227 250 - -
Lal6g0667 280 PANTHER PROTEIN L5, PUTATIVE-RELATED 1 280 - -
Lal6g0667 280 SUPERFAMILY Translational machinery components 11 232 - -
Lal6g0667 280 Hamap 50S ribosomal protein L18 [rplR]. 14 227 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal6g0667 Lal-Chr6 4389109 4391927 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal6g0667 1 272 Cytoplasmic Ribosomal Protein Gene Family AT3G25520 78.351 2.34e-165 459
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal6g0667 K02932 - gmx:100817746 471.855
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal6g0667 6 4389109 4391927 Lal22g0603 22 4241828 4244357 LSH