Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lal6g0660 | ATGTACACCTTCCCCTCTATGGTCTTCACCCTTTTCGTCCTCTTACACCTAACCTCCTCCTACACTCTCCCTCACCACCGCAGAATCCTCCACCAACCCCTCCTCCCACAGGACACCGTCCCTCCCATCCAGCCCCCAAACCCCAAGTACCCATTCTCCTCCACACCCACCACCACCACATCAAACTCTCCCCCTTTCTTCCCATCGTACCTTTCTCCCCCTACTCCTCCCTCCCCCTCCTCCTCCTCCTCCAACTCCTTTCCCGCCAACATTTCCTCCCTCATTCTTCCCCACTCCCAAAAATCCAAACCCTCTTCCTCTAAGCTCATCGCTGCTGCTATTGCTTCCGTTGCCGCTGCTCTTCTCCTTGTTGCTATTTCCGTCTTCCTCTACTTCCGCCGACGAAGGAAGAATGACTCTACCGACGATAAAACATTCAGATCCGACTCCAGTATTCGCTTCTTCCCTCACAGGGACAACAATGTTGAAAATAACAGCGCTGGTAACCGCAAGCTTCTCCACAATTCCTCTACTGCCTCCGAGTTTCTATATCTCGGTACCATTATAGATGATCGTAGTGATTCTCGTGCCAATGGTGGTTCTGGTAATGGTTTAAACCCTCGGAAAATGGACTCTCCGGAGCTCCGGCCACTTCCGCCGCTGGCACGGCAAGTTTCGGAGCTTCGAAGAGGGAGCGAAGAGGTAGGAATGACGGCAAATGCGGAGGAAGAAGAAGAGGAGTTCTACTCGCCGAGAGGCTCTATAGGTGGCCGCGAAAGCTTGAACGGAACTGGATCGGGTTCTAGAAGAGTGTTATCTGCCATGGCTGCTGAGAACTTTGTTGGTGGAAGCAGCGAATCGAGCTCAAGCTCATTCTCTTCTTCATCTTCGGCTTCGCCAGATCGGTCTCATTCGATTAGCCTCTCTCCGCCGGTGAGCATAAGTCCCAGAAAGTCGCCGGAAAATGCTCCTCCTCCGGCACAATCACCAATTGAAACACTTGCCGTCGATGTTCTGTCACGTGCGGTGTCCCCTGCTTACAACCAGCACGTGCGAGAATCCTCTTCTTCTACTTCAATGTCGGAACAAGAGTGTCAGTCTCAGTCACCTTTACTGTCACCGCTTTCTCTGTCACCGAATAGGTTACCGGAGAAAAACCCAGATGAAAAGGCTCAGTCTAGTTGTTCATCACCGAGCAATAACGACGGCGTTTCGTCACCACCCAGATTATCAAATGAAAGCGTAAAGTCCGTGTCTTCATCTTCAGATTTTTCTCTTCCATCACCGGGCAAAGTAGCTATAAATCAGAATAATCAGATTTTGGATCACTCTCCAACAATATCAGATGTTTCAGATCGGTATAGGTATTCACCACTTTCATCTTTGCTACTCTCACCATCACTGCTTTCATCACCAGAAACAGAATTGAACTCGAATTCGAACCCAAACTCGAACCATGCTATGAATCAATCACACAGAAAGCAATGGCAAATTCCAGACCTATTGACACCACCCATTGCCGAATCAGTTACAGTTGAAAATGTTCCTACTAGGAAGCACTGGGAGATTCCAGTTTTGTCAGCATCTGTTGTTTCATCTATTAGAGTTTCTGCTCCTCCAGCACCACCACCGCCGCCGCCACCTCCTCCTGCTTTGGGACAGCGGAAACAGTGGGAGGTGACTGTTGGACAGCCGATTTCGAGGCCACCGGAACTAATACCCCCCTCGAGGCCTTTTGTGTTGCAAACCCCAACAACAAAAGTTTCTCCTGTTGAGTTACGACAGAGTTTGGGGGTGATTGATGATAGTCCTGAGGAGGCATCTAATAAGCCAAAGTTGAAGCCTTTGCATTGGGATAAAGTCAGGGCCAGTTCTGATCGTGAAATGGTGTGGGATCACTTGAGGTCCAGCTCTTTTAAGTTGAACGAGGAGATGATTGAAACTTTGTTTATAGTGAACACACCAAACCCAAAACCAAAGGATTATACTCCACGATCGGTTCTTACCCCGCCAAGTCATGAGGAGAGAGTACTGGATCCCAAGAAGTCCCAAAATATTGCTATCTTGCTAAGAGCACTTAATGTGACTATAGAAGAAGTGTGTGAAGCACTGTTAGAAGGGACTACTGATACACTTGGAACAGAACTACTTGAAAACTTGTTAAAAATGGCACCAAGCAAGGAAGAAGAGCGTAAATTGAAGGAACATAAAGAAGACTCACCAACCAAGCTTGGTCCTGCTGAGAAATTTTTGAAGGCAGTGCTTGATGTACCTTTCGCGTTTAAAAGGGTGGAAGCAATGCTTTACATAGCTAATTTTGAGTCGGAAATGGAATATCTTAGAAAATCTTTTCAAACTTTGGAGGATGCTAAACCAAATTCAGCAAGTCATGTTGCCTGTGAAGAACTGCGAAGTAGTAGAATGTTCTTGAAGCTTCTAGAGGCTGTGCTTAAAACTGGGAATCGCATGAATGTGGGGACAAACCGTGGTGATGCACATGCCTTCAAGCTTGATACACTTCTCAAGCTGGTTGATGTCAAAGGTGCGGATGGGAAAACCACTCTACTGCATTTCGTGGTGCAGGAAATTATCCGAACTGAAGGTGCTCGTCTCACGGGTACTAACCAAGATTCAAGCACAACTTTGAATGATGATGCCAAGTGTAGGAGGCTTGGCTTACAGGTAGTCTCTAGTCTAAGTTCTGATCTAGAAAATGTGAAGAAGGCCGCTTCTATGGATTCTGAAGTTCTTAGCATCGAAGTCTCTAAACTTTCCAAAGGAATCGCACACATTGCAGAGGTTGTGCAATTAATTGAAACATCCATGTCAGGTGACCACAAACAGTTTACAGAATCAATGCTCAAATTCATGAGAATGGCTGAGGAGGAGATTCTAAGAATTCAAGCCGAGGAAAGTGTTGCTTTATCCCTTGTGAAGGAGATCACAGAATACTTCCATGGTAACTTGTCTAAGGAAGAAGCTCATCCATTTAGAATCTTCTTGGTAGTAAGAGACTTCTTAACAGTTCTTGACCGGGTCTGTAAAGAAGTTGGTATGATAAATGAGAGAACCATGGTTAGTTCTGCTCATAGATTCCCTGTTCCAGTGAACCCTTTGCTTCCACAACCCCTTAACCGTATGCTTCCACAACCCCTTCCAGGACTATATGGAAAGCCACATTACAGCTCTTCAGATGATGATAGTCCACCTCCTTAG | 3216 | 0.4661 | MYTFPSMVFTLFVLLHLTSSYTLPHHRRILHQPLLPQDTVPPIQPPNPKYPFSSTPTTTTSNSPPFFPSYLSPPTPPSPSSSSSNSFPANISSLILPHSQKSKPSSSKLIAAAIASVAAALLLVAISVFLYFRRRRKNDSTDDKTFRSDSSIRFFPHRDNNVENNSAGNRKLLHNSSTASEFLYLGTIIDDRSDSRANGGSGNGLNPRKMDSPELRPLPPLARQVSELRRGSEEVGMTANAEEEEEEFYSPRGSIGGRESLNGTGSGSRRVLSAMAAENFVGGSSESSSSSFSSSSSASPDRSHSISLSPPVSISPRKSPENAPPPAQSPIETLAVDVLSRAVSPAYNQHVRESSSSTSMSEQECQSQSPLLSPLSLSPNRLPEKNPDEKAQSSCSSPSNNDGVSSPPRLSNESVKSVSSSSDFSLPSPGKVAINQNNQILDHSPTISDVSDRYRYSPLSSLLLSPSLLSSPETELNSNSNPNSNHAMNQSHRKQWQIPDLLTPPIAESVTVENVPTRKHWEIPVLSASVVSSIRVSAPPAPPPPPPPPPALGQRKQWEVTVGQPISRPPELIPPSRPFVLQTPTTKVSPVELRQSLGVIDDSPEEASNKPKLKPLHWDKVRASSDREMVWDHLRSSSFKLNEEMIETLFIVNTPNPKPKDYTPRSVLTPPSHEERVLDPKKSQNIAILLRALNVTIEEVCEALLEGTTDTLGTELLENLLKMAPSKEEERKLKEHKEDSPTKLGPAEKFLKAVLDVPFAFKRVEAMLYIANFESEMEYLRKSFQTLEDAKPNSASHVACEELRSSRMFLKLLEAVLKTGNRMNVGTNRGDAHAFKLDTLLKLVDVKGADGKTTLLHFVVQEIIRTEGARLTGTNQDSSTTLNDDAKCRRLGLQVVSSLSSDLENVKKAASMDSEVLSIEVSKLSKGIAHIAEVVQLIETSMSGDHKQFTESMLKFMRMAEEEILRIQAEESVALSLVKEITEYFHGNLSKEEAHPFRIFLVVRDFLTVLDRVCKEVGMINERTMVSSAHRFPVPVNPLLPQPLNRMLPQPLPGLYGKPHYSSSDDDSPPP | 1071 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lal6g0660 | 1071 | SMART | it6_source | 603 | 1025 | IPR015425 | - | |
| Lal6g0660 | 1071 | MobiDBLite | consensus disorder prediction | 469 | 494 | - | - | |
| Lal6g0660 | 1071 | MobiDBLite | consensus disorder prediction | 535 | 554 | - | - | |
| Lal6g0660 | 1071 | MobiDBLite | consensus disorder prediction | 281 | 437 | - | - | |
| Lal6g0660 | 1071 | ProSiteProfiles | Formin homology-2 (FH2) domain profile. | 603 | 1036 | IPR015425 | - | |
| Lal6g0660 | 1071 | SUPERFAMILY | Formin homology 2 domain (FH2 domain) | 540 | 1022 | - | - | |
| Lal6g0660 | 1071 | MobiDBLite | consensus disorder prediction | 281 | 316 | - | - | |
| Lal6g0660 | 1071 | MobiDBLite | consensus disorder prediction | 389 | 437 | - | - | |
| Lal6g0660 | 1071 | MobiDBLite | consensus disorder prediction | 537 | 553 | - | - | |
| Lal6g0660 | 1071 | PANTHER | FORMIN-LIKE PROTEIN 1 | 8 | 1069 | - | - | |
| Lal6g0660 | 1071 | MobiDBLite | consensus disorder prediction | 347 | 380 | - | - | |
| Lal6g0660 | 1071 | Gene3D | Formin, FH2 domain | 602 | 1019 | IPR042201 | - | |
| Lal6g0660 | 1071 | MobiDBLite | consensus disorder prediction | 67 | 81 | - | - | |
| Lal6g0660 | 1071 | MobiDBLite | consensus disorder prediction | 36 | 85 | - | - | |
| Lal6g0660 | 1071 | MobiDBLite | consensus disorder prediction | 194 | 268 | - | - | |
| Lal6g0660 | 1071 | Pfam | Formin Homology 2 Domain | 607 | 1010 | IPR015425 | - | |
| Lal6g0660 | 1071 | Coils | Coil | 770 | 790 | - | - | |
| Lal6g0660 | 1071 | MobiDBLite | consensus disorder prediction | 38 | 52 | - | - | |
| Lal6g0660 | 1071 | PANTHER | FORMIN-RELATED | 8 | 1069 | IPR027643 | GO:0003779|GO:0030036|GO:0045010|GO:0051015 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lal6g0660 | Lal-Chr6 | 4346290 | 4350967 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lal6g0660 | 553 | 1058 | FH2 protein (formin) Gene Family | AT3G25500 | 71.120 | 0.0 | 706 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lal6g0660 | - | - | gmx:100802678 | 1079.32 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Lal6g0660 | 6 | 4346290 | 4350967 | Lal22g0596 | 22 | 4198893 | 4203224 | LSH | |
| Lal6g0660 | 6 | 4346290 | 4350967 | Lal18g1028 | 18 | 13264981 | 13269611 | LSH |