Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g0649 ATGGAAGGTCACATGAAGTTTGAAGAAGCTGATCTCATGAGTGACCTAATGCAAGGGAAGGAGCTTACAAAGCAGCTACATAATCATATGTTCTTATCATCATCATCTCATGAAACCAAAGAAGTTTTACTTGAGAAAATACTTTTGTCCTATGAGAAAGCACTCACCAAACTGAAGTGGGAGGCTAATGTAGGAGATAGAGAAACTAAGATCATCAATGGCAACATGATGGATTATTCCCCTTGTTCTTTTACAAATGAGAATCCAAAAAGTGAGGTTTTGGACCAAGAGATTAAGCACAAAAGTGTCTCCAAGAGAAGAAAGATCATTGACATTTGGAAAAAACAAGTGAAGGTGTGTTCAGGAGAAGTGATTGAAGAGTCTCTGGATGATGGCCATAGCTGGAGAAAATATGGACAGAAGGATATCCTTGGAGCAAACTTTCCTAGAGGATATTACAGATGTACACATAAACATGCACAAGGGTGTCTAGTCACAAAGCAAGTGCAAAAATCAGATAAAGACCCAACAACATATGAGATAACCTACAAAGGAAGGCACACATGCATCCAAGCTAATCATGCAAACAAGGCATTCCCATCAAGATCTAAGATTTGCTTGGGAGAACATAAACACCACAACCACCAAAAGAATGAAGCACAAGAAAAGAAAATAGAACAACCACCCCATGAGACAATTTTCTCTTTTAGTTCAGAGCTTGAAGTTAAATTAGAAGACTTGGAAACCAAGGAAAATATCTTCCCATCATTCTGTTTTCCTTCTCCATCAATAGGGTCAGAAAATGAGGACAACAACATGATTGAAAACCCTTTCATGGAATGTTTTTCTCCTACATTCTTATCACATGCCACTTCAGAATCAAACATTTTCTGTTTGTCACCATGCCACTATGGAAGCAATGGACTAGGCCTAAGTGTGCAAACATCAGAATCTATTATCACTGATGTAGTGTCAGCCACAACTTCAATCACCAATTCTCCAATAGTAAACTTGGATGAGTTGAACCTCTTCCTTGATAATGTGGATTTTGACACTTTTCCTATATACCCATGA 1074 0.3808 MEGHMKFEEADLMSDLMQGKELTKQLHNHMFLSSSSHETKEVLLEKILLSYEKALTKLKWEANVGDRETKIINGNMMDYSPCSFTNENPKSEVLDQEIKHKSVSKRRKIIDIWKKQVKVCSGEVIEESLDDGHSWRKYGQKDILGANFPRGYYRCTHKHAQGCLVTKQVQKSDKDPTTYEITYKGRHTCIQANHANKAFPSRSKICLGEHKHHNHQKNEAQEKKIEQPPHETIFSFSSELEVKLEDLETKENIFPSFCFPSPSIGSENEDNNMIENPFMECFSPTFLSHATSESNIFCLSPCHYGSNGLGLSVQTSESIITDVVSATTSITNSPIVNLDELNLFLDNVDFDTFPIYP 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g0649 357 SUPERFAMILY WRKY DNA-binding domain 128 189 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lal6g0649 357 SMART WRKY_cls 129 191 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lal6g0649 357 ProSiteProfiles WRKY domain profile. 124 187 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lal6g0649 357 Gene3D WRKY domain 113 184 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lal6g0649 357 PANTHER WRKY TRANSCRIPTION FACTOR 41-RELATED 1 352 - -
Lal6g0649 357 Pfam WRKY DNA -binding domain 130 189 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lal6g0649 357 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 1 352 IPR044810 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal6g0649 Lal-Chr6 4239604 4242756 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal6g0649 5 200 WRKY Transcription Factor Family AT5G24110 40.306 1.75e-40 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Lal6g0649 WRKY 1.5e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal6g0649 - - aprc:113849885 454.521
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal6g0649 6 4239604 4242756 Lal4g0469 4 3303151 3305538 ECH
Lal6g0649 6 4239604 4242756 Lal6g0649 6 4239604 4242756 ECH
Lal16g1158 16 7911236 7914946 Lal6g0649 6 4239604 4242756 ECH
Lal6g0649 6 4239604 4242756 Lal22g0586 22 4068719 4072127 LSH