Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g0644 ATGCCTACAAAGGTTCTCTTATCTCAACTTCGCACTTCATTCACTTTCACTATGAACCCTCTTTCTTCTCGCGCAACACTTCCCATTTTCTCACCCATCTTATTCTCTTTCAAACTTAAACACCTTCCCCTCCAAAACGCACCGTTTCATCTTCGCCCATTATCCACTCACAGTAGCAGTGGTAGTAGAGGTAATCTTCGTGCTTCCAAGAGTCTCATCGATGAAGAGTCTGAACTCAGTGGCTGGGTTAGCGAGTTAAGGACCGATTCTTACCGTGGCCGACTCACCAGTGATGATGATGACAATAGGGACTCTGTTCGAGGCAGAGGAACTGGAATGGGAAGAGGAGGAGGAAGTGGAAGAGGAAGAGGAAGAGGAAGAGGAAGAGGAAGGGCTGGTAGTGGTGCTGGTAGTGGTAGAATCGATGAGTCAACTCGGAGGGGAACTCGTGACTCGTTTGACTCTGGCAACCGAGGCAGGGGAAGTGGACGTGGAAGGGGAAGGGGAAGGGATATAAGGGGTGAGCCAACTAGGAGGGAAACTCGTGACCCGCTTGACTCGTTCTCAAGGAGAAATTCAAGGGCTATTCAGAATTTTAATGGTGAGAAAGATGAGTTCCGGTCTTCAAGGAATAATACTAATAATAGTGATAATAGGGAAGCTGTGTTTGGGAAGAGTAGTAGAAGAGGTGTGGAATTGAGGAATGCAACTAGAATGTCTTCTCAATTGAAGAGTGAGGAAGAGGAAGAGGATGAGGATGAAGATGATGATGATGATGAGGTGGTAGATAGGTTTAATAGTCGTGGCTTCGATGAATTTCTTAGTGATGATGATGACGATGATGATGAGAGTGAAGGTAGTGAGGAAGATGATGAGATATTGAAAAAGAGCAAAACTGCTTTGTTTGGAAATGAGAAACCAACTCCAAGAGCTGCTTCATCTGAGGGTTCTGAGTCTTATTTGAGTGATACCAGTCACTGCGATGCAGATTGCGGCGGTTGCGGTGTGAATTATTTTGTTATTAAAACAATATTTTTTAATCCGATGCAGTCACATCATTGTGATTCGGAGTCACACCGCAATTGCGGTTGCGGCGGTCACCACAACCGCAATATTGCAGCCGGCCGCATCAGATTTGACCAATGTTCAGTCTCTCCACTATCATTAAAAGCAGTAAAGGATGCTGGGTATGAGAAAATGACTGTTGTTCAGGCAGCAACTCTTCCAATTATACTCCAAGGTAAGGATGTCCTCGCCAAGGCTAGAACAGGCACCGGAAAAACAGTAGCCTTTTTGCTTCCATCAATTGAAGCTGTTGCAAAATTACCGCCGGGTGATCGTGATCAAAGGCGGCCACCAATTCATGTTCTTGTCATATGCCCAACTAGAGAACTTGCAAGCCAAGCTGCTGCAGAAGCCACTAAACTGCTGAAATATCATCCTACCATTGGTGTTCAAGTTGTGATTGGAGGCACAAGACTTGCTTTAGAACAGAAACGCATGCAGGCAAACCCTTGCCAGATCCTTGTTGCTACACCTGGAAGGCTTAGAGATCATGTTGAGAATACTGCTGGTTTTGCAACTAGGCTAATGGGCGTGAAGGTCTTGGTCCTTGATGAAGCTGATCATTTACTAGACATGGGATTTCGCAAAGACATCGAAAAGATAATTGCAGCAACCCCTAAACAACGACAAACACTTATGTTTTCTGCCACGGTTCCGGAAGAGGTGCGTCAAGTCTGTCATATTGCTTTGAGAAGGGATCATGAATATATCAATACTGTTGAAGAGGGTAGTGAGGAGACACATTCAAAGGTTCACCAGACGCATTTAGTTGCTACATTAGACAAGCATTTCTCTTTACTCTATACATTACTGAAGGAGCACATCGCAGATGATGTTGAATATAAGGTTCTTGTTTTCTGCACAACTGCTATGGTCACAAGACTTGTTGCTGAACTTCTTGCTGAGTTGAAGTTGAATGTGAGAGAAATCCATTCGAGAAAGCCGCAGAGTTATAGAACCAGAGTCTCTGATGAGTTTCGGAAGTCAAAGGGTATCATTTTAGTTACTTCCGATGTATCGGCACGTGGAGTTGATTATCCAGATGTCACTCTTGTTATACAGCTTGGTTTACCAGCTGATAGGGAACAGTACATACATAGACTGGGAAGAACAGGGCGGAAAGGTAAAGAAGGACAGGGCATATTACTACTGGCTCCTTGGGAAGAGTTCTTTTTATCTACCGCAAAAGATTTACCAATCGAGAAAGCTGTCGTACCTTCAGTTGATCCTGAAACTAAGAAAAAGGTGGAAAAAGCTCTAGCTCATGTGGAGATGAAGAATAAAGAAGCAGCATATCAGGCATGGCTTGGTTACTACAATTCGAACAAGAAAATAGGAAAAGACAAGTATAGGTTAGTGGAGCTTGCTAATGAATTTAGTAGAAGCATGGGACTTGATAACCCTCCTGCTATTCCTAAGCTAGTTCTTGGAAAGATGGGACTTAAAAATATCCCAGGTTTACGTACCAAATAG 2538 0.4385 MPTKVLLSQLRTSFTFTMNPLSSRATLPIFSPILFSFKLKHLPLQNAPFHLRPLSTHSSSGSRGNLRASKSLIDEESELSGWVSELRTDSYRGRLTSDDDDNRDSVRGRGTGMGRGGGSGRGRGRGRGRGRAGSGAGSGRIDESTRRGTRDSFDSGNRGRGSGRGRGRGRDIRGEPTRRETRDPLDSFSRRNSRAIQNFNGEKDEFRSSRNNTNNSDNREAVFGKSSRRGVELRNATRMSSQLKSEEEEEDEDEDDDDDEVVDRFNSRGFDEFLSDDDDDDDESEGSEEDDEILKKSKTALFGNEKPTPRAASSEGSESYLSDTSHCDADCGGCGVNYFVIKTIFFNPMQSHHCDSESHRNCGCGGHHNRNIAAGRIRFDQCSVSPLSLKAVKDAGYEKMTVVQAATLPIILQGKDVLAKARTGTGKTVAFLLPSIEAVAKLPPGDRDQRRPPIHVLVICPTRELASQAAAEATKLLKYHPTIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHVENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKIIAATPKQRQTLMFSATVPEEVRQVCHIALRRDHEYINTVEEGSEETHSKVHQTHLVATLDKHFSLLYTLLKEHIADDVEYKVLVFCTTAMVTRLVAELLAELKLNVREIHSRKPQSYRTRVSDEFRKSKGIILVTSDVSARGVDYPDVTLVIQLGLPADREQYIHRLGRTGRKGKEGQGILLLAPWEEFFLSTAKDLPIEKAVVPSVDPETKKKVEKALAHVEMKNKEAAYQAWLGYYNSNKKIGKDKYRLVELANEFSRSMGLDNPPAIPKLVLGKMGLKNIPGLRTK 845
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g0644 845 CDD SF2_C_DEAD 606 739 - -
Lal6g0644 845 SMART helicmild6 649 730 IPR001650 -
Lal6g0644 845 Gene3D - 356 593 IPR027417 -
Lal6g0644 845 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 25 37 122 - -
Lal6g0644 845 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 25 368 843 - -
Lal6g0644 845 MobiDBLite consensus disorder prediction 273 289 - -
Lal6g0644 845 MobiDBLite consensus disorder prediction 92 108 - -
Lal6g0644 845 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 408 591 IPR014001 -
Lal6g0644 845 Gene3D - 600 824 IPR027417 -
Lal6g0644 845 CDD DEADc_MSS116 384 593 - -
Lal6g0644 845 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 454 745 IPR027417 -
Lal6g0644 845 PANTHER RNA HELICASE 37 122 - -
Lal6g0644 845 PANTHER RNA HELICASE 368 843 - -
Lal6g0644 845 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 377 405 IPR014014 GO:0003724
Lal6g0644 845 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 625 775 IPR001650 -
Lal6g0644 845 Pfam DEAD/DEAH box helicase 402 579 IPR011545 GO:0003676|GO:0005524
Lal6g0644 845 MobiDBLite consensus disorder prediction 92 319 - -
Lal6g0644 845 MobiDBLite consensus disorder prediction 164 189 - -
Lal6g0644 845 MobiDBLite consensus disorder prediction 246 261 - -
Lal6g0644 845 Pfam Helicase conserved C-terminal domain 623 730 IPR001650 -
Lal6g0644 845 SMART ultradead3 396 609 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal6g0644 Lal-Chr6 4203966 4209401 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal6g0644 379 758 Eukaryotic Initiation Factors Gene Family AT3G19760 28.283 6.37e-43 159
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal6g0644 - - gmx:100799999 919.457
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal6g0644 6 4203966 4209401 Lal18g1033 18 13313684 13318317 LSH