Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g0642 ATGATATTTAATTGGACAAGGACAACTGAAATGCCGAAATTGAAACGTTGTGATCTGGAGGGGGCGAACTGTGAAGGGCATAAATCTTCAGCGATTCAGAAGAAGCGTAAGGCGAATGAGTTTTACTCTTTAGGTAAGCCAGGTTATGCTGAAGATTACAGTAGCGGTTCTGGCTCTTGGTGCAGTGAAGGGTCCTATTGGGATGGTAGTGGTAGTGGTAGTGGTGCTGAGGTTCAATCCAATTCAAATTCAATTTCGAAGCAGTTCCATGGTAAAACAATCACTCGACCTCCATTGACGCGGTCTTCTTGTGGCCGTGTTCAGAAGCTGCCATCAAGATTCAGTGACTCCGTTCTTGATATGTGGAAGGATCGAGAAAATAAAATGGAGGGCAGAGGTTACAGCTTTGAAGATGGTAATAACAAGAGTTTAGCGCAAGATAAGGCAAGCATTAGTGACTGGGATAACTATGGCTTGAAAAACTATCAATGTTGTTCTGAAGTGAAGGTTAGAATGGAAATAGACGGCAAAAGGGAACATTCTGATTCCTCTAGTATCGGTAAAAAGAGTAATACATCTGGACTTGGTTTTGAGGCTGTTGATCAAGCCCCTAATGGGAAAGGTGGAAGGGGGGAAAAGATTTACAAACCAGAGGATTTTGCATTGGGTGATATAGTTTGGGCAAAATGTGGGAAGAGATATCCGGCCTGGCCTGCTGTAGTGATTGATCCTCTCTCGCAGGCTCCCAAATCCGTGCTCAGCTGTTGTGTTCCTGGTGCACTTTGTGTCATGTTTTTTGGTTATTCTAAAAATGGAAAGCGAAGGGATTATGCGTGGGTAAAGCAGGGAATGATTTTCCCATTCTTGAAATTCATGGACAGATTTCAGGGGCAGACCCAGTTGTACAAGAGCAAACCAAGTGATTTTCGCATGGCATTGGAGGAGGCAATGTTGGCGCAAGATGGCCTTCTGGACTCGCAATTGGGAGTAGAGGAAGTAACTAATGTAAAAGCTTATTCAGATGGACTTAAACAGGCCACAGGTTCATATGTTGATCATGAATGTTACTACCAGGGTCAGGGTGCAAGATCTTGTGCTGGCTGTGGTTTGATGACCCCTTGCAAAACAATGAAGAAGCTTAAGGATTCAAGTTGTGAACATCACTTTTATTGCAAATATTGTGCAAAGTTACGAAAATCAAAACAATTTTGTGGCATTTGCAAAATGATATGGCACCACTCAGATGGTGGGAATTGGGTGAGACTCTGTTTCGTTGATCAGGTATGCTGTGATGGTTGTAACGTCTGGGTGCATGCTGAGTGTGCAAAAATTTCCAGCGAACTTTTCAAGGATTTGGAATATATAGATTACTATTGCCCAGATTGCAAGGGAAAAATCAATTATAAATCACCTGTACCGCAGACATATAAGCCAGAAATCAAATCAATAGAGAGTAGTCAAAAACTTGTGATACCTGAGAAGGTAATGGTGGTGTGCAATGGCATGGAAGGAACTTACATCCCAAAGCTTCATTTGGTTATGTGCAACTGTGGCTCTTGTGGTTCACGGAAGCAGACACTGAGTGAATGGGAAAAGCATACAGGTTGCAGAGCCAAAAAATGGAAGCATAGTGTGAAAGTAAAAAACACAATGCTACCACTTGAAAAATGGATCACAGAACACATTTCACAAGATGGAGTTCCGCCCCTGCAGCTAGATCAGCAGCAGGTGCTTGCCTTTTTGCAAGAGAAGTATGAGCCAGTTCATGCAAAATGGACAACAGAAAGATGTGCCATTTGCAGATGGGTTGAAGATTGGGAAGACAATAAAATGATTATCTGTAACAGGTGCCAAATAGCAGTCCACCAAGAATGCTATGGGGCAAAGAATGTTCAGGATTTTGCTTCTTGGGTTTGTAGAGTATGTGAAACTCCTGATGTTGAAAGAGAGTGTTGCCTCTGCCCTCTGTGGATCCAGCAGTCTAGTTCTCTGCTGAGAAAGAAGGCCTTTTCATTCATATCAGTAGTTGAGTATCTTTGTGGTGCTTTAAAGCCAACTGATGTCGAGATGCTGTGGGTTCATGTTACTTGTGCTTGGTTTAAACCCGAGGTTGTTTTCCAAAACCATGAGACCATGGAACCTGCCTTAGGAATCCTTAGAATTCCTCCAAATACCTTTGTCAAGACTTGCGTAATCTGTAAACAAAACCATGGTTCCTGTGCAAGTTGTGTCAAGTGTGCTACTCATTTTCATGTAATATGTGCTGCAAGAGCAGGATATAGCATGGAATTGCATTCAATGGAGAAAAATGGGAGTCAAATGATAAAGAAGCTAATATACTGTGCAGTTCACAGACTCCCAAATCCAGATTCAGTACTGGTTATGCATACACCCGTGGGGGTTTTCTCTCCCAGGACTTCATTTCAAAATCATAAGGGATGCTTAAGGGGATCAAGGCTGGTCTCATCAAAGAATGCTGACCTTAATGAATTACCAACCTCTGAAAGTGACATGGTTGAGCAACTGTCCACTGCCCGATGTCATGTGTACCGAAGGTCTCCTAATAAGAGGGCTAATGTGCCAATAATTCACTTGCTGAGGGGACCCAGTCTTCATTCTTTAAGTGCTGTAATTCAATTGAACGACTATAAGAGTGATGAAGATTCCAAAGTATTTACTTTCAAAGAACGTCTTCATCATTTACAGAAGAAGGAAAAGCGTATAATTTGCTTTGGAAAATCCGGTATTCATGGATGGGGTCTCTTTGCTCGAAGAGATATACAAGAAGGAGAGATGGTTGTTGAATATCGTGGTGAGCAGGTTAGACGTAGTGTTGCTGATCTGAGAGAAGCAAAATACCGTTTAGAAGGCAAAGATTGCTATTTATTCAAGATCAGTGAGGAAGTGGTAATCGACGCAACTCGCAAGGGCAATATTGCACGCTTGATAAACCATTCTTGCATGCCAAACTGCTATGCTAGGATCGTGACTTTGGGTGATCGGGAGAGCCGGATTGTTCTGATTGCCAAGATTAACGTATCTGCTGGGGAAGAGCTCACGTATGATTATTTGTTTGATCCAGATGAGCGTGATGAATTGAAGGTTCCCTGCCTTTGCAATGCTCCTAATTGCAGCATGGGGAAGTCACTTCACAAAGCTACTTCCTCCGCCGGAGACAATCCTCCTGGAAAGCGAATCCGCCGGAGCAAGGCCATCTGCTCCTGCAACTCTCCTCGTCCTCCCTTCCTCTCTGCTCATTCCACTTTCTCATGGTACGAAGAGGATATGTGGACAGAGATTGCTAAGTTTCTGGATGGAAAATCTCTGGTGATGCTTGCAGCCACAAACCGGTGGTTCCGCCGTGCTATCATGGAAGACACTATATGGAAATTCGTGTGCCTCCGTGATCTTCAGGTCCCACCGTCACCTTGCGTCGCATTCAAGTGGAGCAAGCTCTACACTTCAGCCTTTGATGGGAGCCATGCCTACATGTTCCGCCAGCAAGAGAAACACATTGATTGGATGCGAATTGGCGCTTTTTCTTTTGATTCTTCAGAAGCCATCCTGGCAGAGAGACTGGCCTTTCCGGGGAAGATAAGGACAAAGGAAGCCATGGAAAAGATGTTGCAGTCTCAAGGTTGTTGCATGCTAGAAAATGTTAAGCCTGGAATCTGGATTGCTGACCTGCAGCTTGTACGATGCCCTGTTTGTGACCTCAACATGTGCGATGGAACTATGCAGACATTAGATGCAAGGCATATTGAGCTATTCCTTTGTGGAGACTTTCAAAATGGGAGCTGGGAATACGAGCTTGTAGGATCTCATGATGTCAAAAAACGAGCAGATGGAGCTGCTGGTGCCATCTTTGACCCCAAACACCTGGAGGATTCTTCCACAGCTGCGGTGTTTGATTACAAGTCATGGATTGGGAAACCCAATGATTGGCAACCCAAGGCCATGATTGCTTTCCATGCAGTGGCTGTGAACACTAATTTACAAGAAAATGAAGGGTCAAAGTTCATTCCCATTGAGTGCCTTAGCAATTCTACACATTTTATATCAGCTATTCCTTCAGCGAACTTGGCCGATTCATTGCCCGAGTCTTGTTATGTTAGTAGTAGTCATTCAGTTCCAGTTGCAAGGTCAGGATTGCTTGACGAAACTCTCACATTAACATGGGATAAGCCTGACTGCAGAAATTGTGAGTTTAAAGAGCTAATGTGTGGATTTCAGAGCAGTAATAGCAGTCAAGTTCTTTGTTCCCCTGACCACCAAACAGGCAAATCACAACGTGGACTAATAACATTGAGAACCATCACATTAACCATAGTAGGACCAGCTGCATTATGTGTTATTGTGATAATATGTTGCATGTGCTACAAGGACAGAATAGCCAATGCTCCTTTCCACAGTTCTGCACAAGCTGCAATAGCACCACAACATGATGCTATTGCTGGTTCTACAGGTCTGGATGAATCTATCATTGAATCTTATGAGAAGCTAGTACTTGGGGAGAGTCGACGGGTGCCGGGACCGAATGATGTATCATGCTGGATATGCTTATCAGAGTACAATAGCAAAGACATAATCAGATGCATTCCTGAATGTAAACATTGTTTTCATGTTGAATGCATTGATAAGTGGCTTCACATGAACACTACATGCCCAGTTTGCCGCAACTCTCCCTCTCGTTCTTATGATCATGTTATCATCGGTGACCCTTGA 4725 0.4353 MIFNWTRTTEMPKLKRCDLEGANCEGHKSSAIQKKRKANEFYSLGKPGYAEDYSSGSGSWCSEGSYWDGSGSGSGAEVQSNSNSISKQFHGKTITRPPLTRSSCGRVQKLPSRFSDSVLDMWKDRENKMEGRGYSFEDGNNKSLAQDKASISDWDNYGLKNYQCCSEVKVRMEIDGKREHSDSSSIGKKSNTSGLGFEAVDQAPNGKGGRGEKIYKPEDFALGDIVWAKCGKRYPAWPAVVIDPLSQAPKSVLSCCVPGALCVMFFGYSKNGKRRDYAWVKQGMIFPFLKFMDRFQGQTQLYKSKPSDFRMALEEAMLAQDGLLDSQLGVEEVTNVKAYSDGLKQATGSYVDHECYYQGQGARSCAGCGLMTPCKTMKKLKDSSCEHHFYCKYCAKLRKSKQFCGICKMIWHHSDGGNWVRLCFVDQVCCDGCNVWVHAECAKISSELFKDLEYIDYYCPDCKGKINYKSPVPQTYKPEIKSIESSQKLVIPEKVMVVCNGMEGTYIPKLHLVMCNCGSCGSRKQTLSEWEKHTGCRAKKWKHSVKVKNTMLPLEKWITEHISQDGVPPLQLDQQQVLAFLQEKYEPVHAKWTTERCAICRWVEDWEDNKMIICNRCQIAVHQECYGAKNVQDFASWVCRVCETPDVERECCLCPLWIQQSSSLLRKKAFSFISVVEYLCGALKPTDVEMLWVHVTCAWFKPEVVFQNHETMEPALGILRIPPNTFVKTCVICKQNHGSCASCVKCATHFHVICAARAGYSMELHSMEKNGSQMIKKLIYCAVHRLPNPDSVLVMHTPVGVFSPRTSFQNHKGCLRGSRLVSSKNADLNELPTSESDMVEQLSTARCHVYRRSPNKRANVPIIHLLRGPSLHSLSAVIQLNDYKSDEDSKVFTFKERLHHLQKKEKRIICFGKSGIHGWGLFARRDIQEGEMVVEYRGEQVRRSVADLREAKYRLEGKDCYLFKISEEVVIDATRKGNIARLINHSCMPNCYARIVTLGDRESRIVLIAKINVSAGEELTYDYLFDPDERDELKVPCLCNAPNCSMGKSLHKATSSAGDNPPGKRIRRSKAICSCNSPRPPFLSAHSTFSWYEEDMWTEIAKFLDGKSLVMLAATNRWFRRAIMEDTIWKFVCLRDLQVPPSPCVAFKWSKLYTSAFDGSHAYMFRQQEKHIDWMRIGAFSFDSSEAILAERLAFPGKIRTKEAMEKMLQSQGCCMLENVKPGIWIADLQLVRCPVCDLNMCDGTMQTLDARHIELFLCGDFQNGSWEYELVGSHDVKKRADGAAGAIFDPKHLEDSSTAAVFDYKSWIGKPNDWQPKAMIAFHAVAVNTNLQENEGSKFIPIECLSNSTHFISAIPSANLADSLPESCYVSSSHSVPVARSGLLDETLTLTWDKPDCRNCEFKELMCGFQSSNSSQVLCSPDHQTGKSQRGLITLRTITLTIVGPAALCVIVIICCMCYKDRIANAPFHSSAQAAIAPQHDAIAGSTGLDESIIESYEKLVLGESRRVPGPNDVSCWICLSEYNSKDIIRCIPECKHCFHVECIDKWLHMNTTCPVCRNSPSRSYDHVIIGDP 1574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g0642 1574 PANTHER PHD FINGER PROTEINS 1 1045 - -
Lal6g0642 1574 CDD PHD_TCF19_like 404 462 - -
Lal6g0642 1574 Pfam PHD-finger 609 643 - -
Lal6g0642 1574 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 584 645 IPR013083 -
Lal6g0642 1574 SMART PHD_3 1516 1559 IPR001965 -
Lal6g0642 1574 SMART PHD_3 729 785 IPR001965 -
Lal6g0642 1574 SMART PHD_3 596 643 IPR001965 -
Lal6g0642 1574 SMART PHD_3 403 463 IPR001965 -
Lal6g0642 1574 CDD PHD_ATX3_4_5_like 596 642 IPR042011 -
Lal6g0642 1574 Pfam SET domain 918 1023 IPR001214 GO:0005515
Lal6g0642 1574 SUPERFAMILY FYVE/PHD zinc finger 594 657 IPR011011 -
Lal6g0642 1574 Gene3D - 212 323 - -
Lal6g0642 1574 SMART set_7 907 1030 IPR001214 GO:0005515
Lal6g0642 1574 SUPERFAMILY FYVE/PHD zinc finger 427 469 IPR011011 -
Lal6g0642 1574 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1478 1563 IPR013083 -
Lal6g0642 1574 SUPERFAMILY SET domain 900 1044 IPR046341 -
Lal6g0642 1574 Pfam PWWP domain 223 318 IPR000313 -
Lal6g0642 1574 SUPERFAMILY RING/U-box 1509 1562 - -
Lal6g0642 1574 MobiDBLite consensus disorder prediction 177 211 - -
Lal6g0642 1574 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 646 786 IPR013083 -
Lal6g0642 1574 ProSitePatterns Zinc finger PHD-type signature. 597 642 IPR019786 -
Lal6g0642 1574 Pfam PHD-zinc-finger like domain 680 784 - -
Lal6g0642 1574 ProSiteProfiles Extended PHD (ePHD) domain profile. 648 785 IPR034732 -
Lal6g0642 1574 ProSiteProfiles SET domain profile. 907 1024 IPR001214 GO:0005515
Lal6g0642 1574 ProSiteProfiles Zinc finger RING-type profile. 1517 1559 IPR001841 -
Lal6g0642 1574 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 395 469 IPR013083 -
Lal6g0642 1574 CDD SET_SETD1-like 896 1044 - -
Lal6g0642 1574 ProSiteProfiles Zinc finger PHD-type profile. 594 645 IPR019787 -
Lal6g0642 1574 SUPERFAMILY F-box domain 1094 1153 IPR036047 GO:0005515
Lal6g0642 1574 ProSiteProfiles PWWP domain profile. 222 291 IPR000313 -
Lal6g0642 1574 Pfam Ring finger domain 1516 1559 IPR001841 -
Lal6g0642 1574 SUPERFAMILY Tudor/PWWP/MBT 214 325 - -
Lal6g0642 1574 SMART PWWP_4 220 289 IPR000313 -
Lal6g0642 1574 Gene3D SET domain 881 1062 IPR046341 -
Lal6g0642 1574 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 1054 IPR025780 -
Lal6g0642 1574 MobiDBLite consensus disorder prediction 72 102 - -
Lal6g0642 1574 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE 1 1045 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal6g0642 Lal-Chr6 4179895 4194987 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal6g0642 1333 1563 C3H Transcription Factor Family AT2G25410 39.344 2.76e-46 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lal6g0642 SET 4.6e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal6g0642 - - gmx:100793624 1504.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal6g0642 6 4179895 4194987 Lal6g0642 6 4179895 4194987 ECH
Lal5g0041 5 485820 487517 Lal6g0642 6 4179895 4194987 PCT
Lal6g0642 6 4179895 4194987 Lal5g0041 5 485820 487517 PCT