Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g0641 ATGTTGGTGATGATTGAGGGCATTGGCAATCAAAACCAAGTTATGTCACCAACAACATGCGAAATTTGCATTGAGCCCTTACCACTTGACAAGGTTTTCAACAACAACAACCAATGTTTGCACCCCTTTTGCTTGGACTGTATAGCTAAATACATAGAAGCAAAGGTTGAAGATAACACAGCGAACATTTCATGTCCTGCCTTGAACTGTAAGCAACTGTTAGATCCATTGTTTTGTAGGTCAATCATCTCCAATCAACTGTTTGATAAATGGTGTGAAACTCTTTGCACTTCCACAGTTTTAAACCTTGAAAACCGATCTTATTGTCCGAATCAACATTGTTCATCTTTGGTTATCAATGAATGCAAAGATGAAGCTAAGAAAGTGAAGTGTCCTAATTGCAACAAGTTTTTCTGCTTCAAATGCCAGATTCCTTGGCATGCTGGGTATAGGTGTGAAGAGAGTGGACAAGTGAATCTAAGGGATGGGAATGATGTTCTATTTGGAGAACTGGTGGAAATAAAAAAATGGTGTAGATGCTATAAATGTGGTCACTGTCTTGAGCGTAGTGGAGGCTGCAGATTGGTTCAGTGCAGATGCAAAGCCTTGTGTTGCTATGAATGTGGAGAAAAGGGTCACTGGGGTCCTTGCAATGAAGTTGGAGATGGTACTGGTGCTCTACCAATTAGGATGTATTGTGCATATCTTGGCCTAAGAAAACATGTCATGTAA 732 0.4016 MLVMIEGIGNQNQVMSPTTCEICIEPLPLDKVFNNNNQCLHPFCLDCIAKYIEAKVEDNTANISCPALNCKQLLDPLFCRSIISNQLFDKWCETLCTSTVLNLENRSYCPNQHCSSLVINECKDEAKKVKCPNCNKFFCFKCQIPWHAGYRCEESGQVNLRDGNDVLFGELVEIKKWCRCYKCGHCLERSGGCRLVQCRCKALCCYECGEKGHWGPCNEVGDGTGALPIRMYCAYLGLRKHVM 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g0641 243 ProSiteProfiles TRIAD supradomain profile. 16 233 IPR044066 -
Lal6g0641 243 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 14 209 IPR031127 GO:0004842|GO:0016567
Lal6g0641 243 Pfam IBR domain, a half RING-finger domain 90 152 IPR002867 -
Lal6g0641 243 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 15 101 IPR013083 -
Lal6g0641 243 SUPERFAMILY RING/U-box 89 154 - -
Lal6g0641 243 SUPERFAMILY RING/U-box 166 219 - -
Lal6g0641 243 SUPERFAMILY RING/U-box 17 98 - -
Lal6g0641 243 ProSiteProfiles Zinc finger RING-type profile. 20 69 IPR001841 -
Lal6g0641 243 SMART ibrneu5 89 152 IPR002867 -
Lal6g0641 243 ProSitePatterns Zinc finger RING-type signature. 39 48 IPR017907 -
Lal6g0641 243 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 14 209 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal6g0641 39 209 C3H Transcription Factor Family AT2G19610 29.032 4.29e-14 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal6g0641 K11975 - qsu:112041057 265.003