Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g0634 ATGCTTAACCTTGAATTTGAATTGAGATGGGAGATGAGAAGAGCTTGTTTGATTGTGGGGTTGAAGAAAGTTGAGATTTTTATGATTGAGATGGGTGTAGGAGGTGTTGGGTTATGGAACGATGAAGAAAAATCAATGGTGGCTAAGGTTCTAGGTACTCATGCTTTTGATTATTTGTTTAGCAACTCTTTTTCAAATGAGAATCTGTTAATGACAATAGGGAGTGGTGAGAATCTTCAGAACAAGCTCTCAGATCTTGTGGAACGACCCAACGAGTCAAATTTCAGCTGGAACTATGCAGTATTCTGGCAACTTTCACAGTCCAAATTTGGAGACTTGGTTCTTGGTTGGGGTGATGGGTGTTGCAGGGAACCAAGGGAGGGAGAAAGCAACGGTGATAGCGGTGGAGTTAGAGGAATTTTGAGCCTTGGCATGAATGATGAGATGCAACAGAAGATGAGGAAGAGGGTTCTTCAGAAGTTGCACACAACTTTTGGTGACTCAGATGATGAGGACAACTATGCTTTTGGATTAGACCGTGTTACTGACACAGAGATGTTCTTTCTTGCTTCCATGTATTTCTCTTTCCCTCGTGGACATGGTGGTCCAGGTAAGTGCTTTGCATCTGGGAAGCACCTGTGGCTCAATGATGTGATGAAATCTAGTTCCTATGATTATTGTGTGAGATCTTTCCTTGCTAAATCGGCTGGAATTCATACTGTTGTTTTGGTACCTACTGATTTGGGTGTGGTGGAGTTGGGTTCTATGAAGATGGTTAGGGAGAACTTTGATTTGTTGCATGCTGTGAAATCTGTGTTTTCAGCACAATCATCATTCCCCAGGGTTAATAAGCCAGTTTCACCTGTTAATGTGATAAACAATGAGAAAAGAGATGGGAATGCCCCTTTTCCTGGTTTAGCAATTGAGGAAGGTAACAATAAGAACAGTGCTAATAAACTAGAGGCAAATGGAGCTTCAAAGATTTTTGGGCAGGATTTGAACTCTTTGAATAAGGGTCGTAATACTCATTTTCGGGAAAAGCTTGCTGTTCGGAAAATGGAGGAGAGGCCTCCATGGAGAGGTCACCCCAATGGGAATAGCGGCATTGGCTTTCCGAATACTCAAAATGGTATTCATGGTTCTAGTTGGGGAGTTAGTACTCAAGGTGTGAGGCCGTCGCCTAGCCCCGTGGAAATCTTTGCTCCCAAACCTACCACAAGCGATGTACCGACGCTGGCAAATGGCGCAAGACATGATTTCTTGCTAAAAAATTATCATCAGCTGCAACGACCGGGGCAAATGCAAATTGATTTCTCAGGTGCTACTTCAAGACCTGCCGTGATTGCTGAATCCGAGCTTTCTGATATCGACGCCTCATGCAAGGAGGACAACTCGAGTGCAGTTGACGAGAAGAGGCCTAGAAAGCGGGGGAGGAAGCCTGCCAATGGAAGGGAAGAACCCCTCAATCACGTGGAAGCTGAGAGACAAAGGCGTGAGAAGCTGAACCAGCGATTCTATGCCTTACGAGCAGTCGTGCCAAATATCTCCAAGATGGATAAGGCATCTCTTTTGGGAGATGCTATTGCTTACATCAATGAGCTGCAGGCAAAACTGAAGATTATGGAGTCTCAAAGAGGAGGAGATATATTTGGAAGCACATCCAGGGATAAATCAGTATCAGAAGTGGCCAACTCAAGAGTGGAAACTCCTTTTGTGGATATTGAAGCTGTTCAAGATGGAATCATTGTAAAGGTGAGCTCCTCTATTCATGCTCACCCTGTATCAAAAGTAATACAGGCATTCAAAGAAGCCGAAATCAGCATTGTAGAGTCAAAACTTGCTGCTGTAAATGATACCGTCTTGCACACCTTCGTCATCAAGTCCCGAAGACCTGAGCAGCTTACGAAGGAGAAGTTAATTGCAGCATTTTCCCGCGAATCCAGCTCCTTACAGCCATTACCATCTGTTGGTTAG 1974 0.4412 MLNLEFELRWEMRRACLIVGLKKVEIFMIEMGVGGVGLWNDEEKSMVAKVLGTHAFDYLFSNSFSNENLLMTIGSGENLQNKLSDLVERPNESNFSWNYAVFWQLSQSKFGDLVLGWGDGCCREPREGESNGDSGGVRGILSLGMNDEMQQKMRKRVLQKLHTTFGDSDDEDNYAFGLDRVTDTEMFFLASMYFSFPRGHGGPGKCFASGKHLWLNDVMKSSSYDYCVRSFLAKSAGIHTVVLVPTDLGVVELGSMKMVRENFDLLHAVKSVFSAQSSFPRVNKPVSPVNVINNEKRDGNAPFPGLAIEEGNNKNSANKLEANGASKIFGQDLNSLNKGRNTHFREKLAVRKMEERPPWRGHPNGNSGIGFPNTQNGIHGSSWGVSTQGVRPSPSPVEIFAPKPTTSDVPTLANGARHDFLLKNYHQLQRPGQMQIDFSGATSRPAVIAESELSDIDASCKEDNSSAVDEKRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAIAYINELQAKLKIMESQRGGDIFGSTSRDKSVSEVANSRVETPFVDIEAVQDGIIVKVSSSIHAHPVSKVIQAFKEAEISIVESKLAAVNDTVLHTFVIKSRRPEQLTKEKLIAAFSRESSSLQPLPSVG 657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g0634 657 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 79 273 IPR025610 -
Lal6g0634 657 MobiDBLite consensus disorder prediction 458 496 - -
Lal6g0634 657 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 488 545 IPR036638 GO:0046983
Lal6g0634 657 SMART finulus 491 540 IPR011598 GO:0046983
Lal6g0634 657 Gene3D - 478 546 IPR036638 GO:0046983
Lal6g0634 657 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 485 534 IPR011598 GO:0046983
Lal6g0634 657 CDD bHLH_AtAIB_like 482 545 - -
Lal6g0634 657 PANTHER MYC 33 648 IPR045084 GO:0003700|GO:0006355
Lal6g0634 657 PANTHER ABA-INDUCIBLE BHLH-TYPE TRANSCRIPTION FACTOR 33 648 - -
Lal6g0634 657 Pfam Helix-loop-helix DNA-binding domain 489 535 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal6g0634 Lal-Chr6 4133429 4135727 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal6g0634 31 657 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G01260 50.534 0.0 551
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lal6g0634 bHLH-MYC_N 5.2e-53 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal6g0634 - - lang:109336709 998.423
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal6g0634 6 4133429 4135727 Lal6g0634 6 4133429 4135727 ECH
Lal6g0634 6 4133429 4135727 Lal18g1039 18 13383912 13386162 LSH
Lal3g1549 3 21251299 21253033 Lal6g0634 6 4133429 4135727 PCT
Lal6g0634 6 4133429 4135727 Lal3g1549 3 21251299 21253033 PCT