Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g0633 ATGGAGCAACAACAACAACCACTAAACGCCGCCACCGAAGACGACCTAACAACCACCACCACCACCACCACCACAAAACCAGACAACTCAAACGGCGGCGGAACGCGCCATCCAGTCTACCGCGGCGTCCGGAAGCGGCGCTGGGGAAAATGGGTATCTGAAATTCGAGAACCACGCAAGAAATCACGCATATGGCTCGGCTCCTTCCCGGAGCCAGAGATGGCAGCGAAGGCCTATGACGTTGCCGCCTACTGCCTTAAAGGCCGGAAGGCACAGCTCAACTTCCCCGACGAGGTGCACCACCTGCCGCCTTTGCCGCCGGCATCTGCATGCACCGCAAGGGACATCCAAGCGGCAGCAGCAAAGGCGGCCCACATGATGATAAAGGCTGCCGGTTCATCGGATAAGAGTGGCATTGGTTCTTCTTCAGACGGTAACGGAGATGGCGGCGGCGTAGATGATTTTTGGGGTGAGATAGAGCTGCCGGAACTAATGAATAGTAAGTGGTGGACATTTTCCGGTGACATCACGGCGTGCCTATAG 543 0.5691 MEQQQQPLNAATEDDLTTTTTTTTTKPDNSNGGGTRHPVYRGVRKRRWGKWVSEIREPRKKSRIWLGSFPEPEMAAKAYDVAAYCLKGRKAQLNFPDEVHHLPPLPPASACTARDIQAAAAKAAHMMIKAAGSSDKSGIGSSSDGNGDGGGVDDFWGEIELPELMNSKWWTFSGDITACL 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g0633 180 MobiDBLite consensus disorder prediction 133 152 - -
Lal6g0633 180 CDD AP2 40 97 IPR001471 GO:0003700|GO:0006355
Lal6g0633 180 ProSiteProfiles AP2/ERF domain profile. 39 96 IPR001471 GO:0003700|GO:0006355
Lal6g0633 180 SMART rav1_2 39 102 IPR001471 GO:0003700|GO:0006355
Lal6g0633 180 Pfam AP2 domain 38 88 IPR001471 GO:0003700|GO:0006355
Lal6g0633 180 PRINTS Ethylene responsive element binding protein signature 40 51 IPR001471 GO:0003700|GO:0006355
Lal6g0633 180 PRINTS Ethylene responsive element binding protein signature 78 98 IPR001471 GO:0003700|GO:0006355
Lal6g0633 180 MobiDBLite consensus disorder prediction 1 32 - -
Lal6g0633 180 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 3 177 - -
Lal6g0633 180 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 3 177 - -
Lal6g0633 180 MobiDBLite consensus disorder prediction 1 39 - -
Lal6g0633 180 Gene3D AP2/ERF domain 39 97 IPR036955 GO:0003700|GO:0006355
Lal6g0633 180 SUPERFAMILY DNA-binding domain 39 98 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal6g0633 Lal-Chr6 4121349 4121891 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal6g0633 16 167 AP2-EREBP Transcription Factor Family AT1G01250 61.491 1.67e-52 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Lal6g0633 AP2 4.5e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal6g0633 K09286 - gmx:100802845 233.802
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal6g0633 6 4121349 4121891 Lal6g0633 6 4121349 4121891 ECH
Lal6g0633 6 4121349 4121891 Lal22g0572 22 3917485 3917997 LSH
Lal6g0633 6 4121349 4121891 Lal18g1040 18 13410282 13410797 LSH
Lal3g1548 3 21238981 21239532 Lal6g0633 6 4121349 4121891 PCT
Lal6g0633 6 4121349 4121891 Lal3g1548 3 21238981 21239532 PCT