Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g0617 ATGTTAAACCATATGGAATATACTTATTCAGTTGAAGCTGCTACTGATGCAGAAAATTATAGCAGCATAACTCCACCATCAGCTATGAGACGGAAGAAAAACAAAAACACAAGGAGGTTCAGTGATAAACAAATCAGATCATTGGAATCTATGTTTGAGACAGAGTCAAAGCTAGACCATGGAAAGAAGTTGCAGTTGGCAAGAGAGCTTGGGTTGCAGCCAAGACAAATTGCTATATGGTTTCAGAACAGAAGAGCTAGATGGAAATCAAAGCAACTTGAGAGAGATTGCAACATACTTAGATCCAATCATAACAATTTGGCTTCAAAATTTGAAGCTCTCAAGAAGGAGAAACAAACATTATTAGTACAGTTGCAGAAACTGAATGATATAATACAGAAGCCACAAGAGGAAGCTCGAATTTCAAGTTCTACACAAGTTGAAGCAGCAAACATCATGAACAATAAATCAAAAAATGGAGACACTATCAAATGTGAAGCAGAGGTAAATCCAAGGACATCAATGGAAAGATCAGAACATGTACTTGGTGTTCTTTCTGATGATGACACAAGCATAAAGGTAGAATACTTTGGCATGGGTAATGAACCTGATCTTCTCAATTTTGTTGAACATGCTGAAGGTTCTTTAACCTCACCAGAAGAATGGAGCACCTTTGAATCGGATCATCTTTTAGCCCAATCAACCAGTGATTTTCAATGGTGGGACTTTTGGTCCTAA 738 0.3753 MLNHMEYTYSVEAATDAENYSSITPPSAMRRKKNKNTRRFSDKQIRSLESMFETESKLDHGKKLQLARELGLQPRQIAIWFQNRRARWKSKQLERDCNILRSNHNNLASKFEALKKEKQTLLVQLQKLNDIIQKPQEEARISSSTQVEAANIMNNKSKNGDTIKCEAEVNPRTSMERSEHVLGVLSDDDTSIKVEYFGMGNEPDLLNFVEHAEGSLTSPEEWSTFESDHLLAQSTSDFQWWDFWS 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g0617 245 ProSiteProfiles 'Homeobox' domain profile. 31 91 IPR001356 GO:0003677
Lal6g0617 245 CDD homeodomain 35 92 IPR001356 GO:0003677
Lal6g0617 245 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 16 245 IPR045224 GO:0003700
Lal6g0617 245 SMART HOX_1 34 95 IPR001356 GO:0003677
Lal6g0617 245 Pfam Homeodomain 38 89 IPR001356 GO:0003677
Lal6g0617 245 Pfam Homeobox associated leucine zipper 91 130 IPR003106 GO:0006355|GO:0043565
Lal6g0617 245 Gene3D - 27 98 - -
Lal6g0617 245 Coils Coil 90 131 - -
Lal6g0617 245 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-7 16 245 - -
Lal6g0617 245 ProSitePatterns 'Homeobox' domain signature. 66 89 IPR017970 GO:0000981|GO:0006355
Lal6g0617 245 PRINTS Lambda-repressor HTH signature 62 71 IPR000047 GO:0003677
Lal6g0617 245 PRINTS Lambda-repressor HTH signature 71 87 IPR000047 GO:0003677
Lal6g0617 245 SUPERFAMILY Homeodomain-like 19 93 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal6g0617 Lal-Chr6 3981737 3983435 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal6g0617 36 245 Homeobox Transcription Factor Family AT2G46680 51.101 1.07e-59 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lal6g0617 Homeodomain 3e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal6g0617 K09338 - gmx:100797862 322.013
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal6g0617 6 3981737 3983435 Lal4g0524 4 3794807 3796279 ECH
Lal6g0617 6 3981737 3983435 Lal21g0585 21 4362503 4364931 ECH
Lal6g0617 6 3981737 3983435 Lal6g0617 6 3981737 3983435 ECH
Lal6g0617 6 3981737 3983435 Lal22g0559 22 3812809 3814709 LSH
Lal6g0617 6 3981737 3983435 Lal18g1051 18 13528718 13529878 LSH