Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g0611 ATGGGGAAAAAGGGAAGTAGTTCTTGGTTAACTGCTGTCAAAAGGGCATTTAGATCTCCAACCAAAGACAGTAACAGAAGAAGAGAGGACTATGATCATGAAGAAGATGAAGAGAAGAAGAGAGAAAAAAGAAGATGGATTTTTAGAAAGAATCATGAAACAGAGAACATTCAACAAAGTCCAACAAAGTCAAAGCATTTTGTAGCTGCAACAACAAATGCAAGTGTGGGTTCAAGGACAGAACAAAATCAGAAGCATGCACTTGAAATGGCTATGGCAACCGCTGAGGCTGCTATGGCCACTGCTCAAGCTGCTGTGGAGGTTGCAAGGTTGACCAAGCCTAGTACTACTACTACTACTACTAATTATCATGCTAGGGACCATTTTGCTGCTATTGTGATTCAAACTGCTTTTAGAGGATATTTGGCTAGAAGAGCACTATGTGCGCTTAAGGGGTTGGTGAAGTTGCAAGCTTTGGTAAGGGGTCACAATGTTAGGAAGCAGGCAAAGATGACCCTTAAATGCATGCAGGCTTTGGTTAGAGTACAAGCAAGGGTTCTTGATCAGCGCATAAGGTATTCACTTGATGGTAGTCGAAAATCTACCTTCAGTGACACCGCCAGTGTTTCGGAATTGCGATATCTTCAGGAGATTTCAGATAGGAAATCAGTATCAAGAGAAGGAAGCAGCATTGCAGATGATTGGGATCACAGGCCACACACAGTTGAGGAAGTTAAGGCTATGTTGCAGCAGAGGAAGGAAGCAGCTATGAAGCGAGAAAAGTCCTTGTCTCAAGCCTTTTCGCAACAGATTTGGAGGAACGGTAGGAAATCGTCAATTGGAAATGAAGATGAGCTGGAAGAGAGGCCAAAATGGCTCGACCGGTGGATGGCTACAAAGCCATGGGAGGGCAGGGGAAGAGCTTCAACTGATCAGAGAGACCCCATTAAGACTGTGGAAATTGACACTTCTCAGCCTTACTCGTATCTAGGAGGATCCAATTACAGAAGATCACATCCAAATTATCAATATAACCCACACCACCAACCACAAAGACATTCCATAGCTTCCCCGATCCACAGAACCCACCAAAATGGATCAATTCACCAATCCCCTTCAACCCCGTCTCCAGCTAAATCAAGACAAATACAAGTCCGGTCCGCAAGCCCTCGCTGTGTTAGAGAAGATAGAACCTTACACATCTCCCAAACACCAAGCCTTAGGTCTACTTATAGTTACACAGGGAACTTGTACCAAAATGGAAGGGCTGGGACAAGTAATGGTGGTGGTGTTGCTGCATTGCCTAATTACATGGCTGCAACCGAATCTGCAAAAGCTCGAATTCGATCGCAGAGCGCGCCGAGGCAGAGACCATCGACACCAGAGAGGGAGAGGGGAGCTGGATTAGTTAAGAAAAAGCTTTCCTTCCCGGCTCCAGATCCTTATAATGTAAGAGCTGGTTATGGGAATTATGGGCAGAATTTAAGGAGTCCAAGCTTCAAGAGTGTATGTGCATCACATTTTGGTATGGAACAGCAATCCAACTACTCTTCTTGCTGCACTGAGAGTATTGGTGGAGAGATTTCTCCTTCTTCAACTAGTGACCTTAGAAAGTGGCTTAAGTGA 1626 0.4471 MGKKGSSSWLTAVKRAFRSPTKDSNRRREDYDHEEDEEKKREKRRWIFRKNHETENIQQSPTKSKHFVAATTNASVGSRTEQNQKHALEMAMATAEAAMATAQAAVEVARLTKPSTTTTTTNYHARDHFAAIVIQTAFRGYLARRALCALKGLVKLQALVRGHNVRKQAKMTLKCMQALVRVQARVLDQRIRYSLDGSRKSTFSDTASVSELRYLQEISDRKSVSREGSSIADDWDHRPHTVEEVKAMLQQRKEAAMKREKSLSQAFSQQIWRNGRKSSIGNEDELEERPKWLDRWMATKPWEGRGRASTDQRDPIKTVEIDTSQPYSYLGGSNYRRSHPNYQYNPHHQPQRHSIASPIHRTHQNGSIHQSPSTPSPAKSRQIQVRSASPRCVREDRTLHISQTPSLRSTYSYTGNLYQNGRAGTSNGGGVAALPNYMAATESAKARIRSQSAPRQRPSTPERERGAGLVKKKLSFPAPDPYNVRAGYGNYGQNLRSPSFKSVCASHFGMEQQSNYSSCCTESIGGEISPSSTSDLRKWLK 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g0611 541 MobiDBLite consensus disorder prediction 19 42 - -
Lal6g0611 541 PANTHER IQ-DOMAIN 5-RELATED 1 541 - -
Lal6g0611 541 MobiDBLite consensus disorder prediction 303 318 - -
Lal6g0611 541 MobiDBLite consensus disorder prediction 1 42 - -
Lal6g0611 541 Gene3D - 125 178 - -
Lal6g0611 541 Pfam Protein of unknown function (DUF4005) 389 495 IPR025064 -
Lal6g0611 541 MobiDBLite consensus disorder prediction 319 387 - -
Lal6g0611 541 ProSiteProfiles IQ motif profile. 127 155 IPR000048 GO:0005515
Lal6g0611 541 MobiDBLite consensus disorder prediction 303 405 - -
Lal6g0611 541 SMART iq_5 149 170 IPR000048 GO:0005515
Lal6g0611 541 SMART iq_5 126 148 IPR000048 GO:0005515
Lal6g0611 541 Pfam IQ calmodulin-binding motif 130 147 IPR000048 GO:0005515
Lal6g0611 541 Pfam IQ calmodulin-binding motif 154 170 IPR000048 GO:0005515
Lal6g0611 541 ProSiteProfiles IQ motif profile. 151 178 IPR000048 GO:0005515
Lal6g0611 541 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 121 171 IPR027417 -
Lal6g0611 541 MobiDBLite consensus disorder prediction 446 469 - -
Lal6g0611 541 PANTHER PROTEIN IQ-DOMAIN 1-LIKE ISOFORM X1 1 541 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal6g0611 Lal-Chr6 3934358 3937811 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal6g0611 1 541 IQD Protein Family AT1G01110 57.143 9.97e-179 512
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal6g0611 - - adu:107472901 791.186
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal6g0611 6 3934358 3937811 Lal6g0611 6 3934358 3937811 ECH
Lal6g0611 6 3934358 3937811 Lal22g0551 22 3740151 3743203 LSH
Lal6g0611 6 3934358 3937811 Lal18g1056 18 13590609 13593928 LSH