Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g0607 ATGAAGCAGAGCAACACGAAGATGAAGAATGGTAGTGACAGTAATTGTTCTGAGGATATGGTTAGGTGGGAGAGGATTTTGCCAAAAATGGTTCTTAGAGTTCTTCTCATCGAACCTGATTATTCTACTCGCCACATCATCGCTGCTCTTCTCCGAAATTGCAGTTATAAAGTTACTGCTGTTCGGGACGGATTAAAAGCATGGCAGACATTGAAGAGGAAAGCACCTGACATAGATCTCATATTAACAGAAGTGCAGTTGCCAGCAATATCTGGATTTCCACTTCTCACTTTAATCATGGAACATGACATTTGCAAAAACATTCCTGTTATAATGATGTCTTCTCAGGATTCAGTTAGCATGGTTCTGAAATGCATGTCAAAAGGTGCAGCTGATTTTCTTGTAAAACCTGTTCGGAGGAATGAGCTTGGGAACTTGTGGCAGCACGTATGGAGAAGACATGCTATTAGAAGTTCTCCTCAAAATACATTACCACAGAAGAAACTTAAAACTGCCTCAGAAGACAACTCTGCAAGCAATCAAATTAGTGGTTCTGTGGCTTCCGCACAGAAAATTAATGAATGCAGTGAGAAATGGAGCGAGGCTCAAAGCACTTATACATCACCAAATTTTCAAGCTGAGAGTGCTTACATGGAAAATATGCCAGATGCGTCCCAGATGAAGAGTTCTTTGAAATTGAGCAACATTGATGTGGTGAAACATGAAGAGTCCACCACATTTGAAAGTGAATCAGCTAAGCATGATGATGGGTCAGGAGAAACATTTACTGCAGAGGAATCAATTACATTTGTTTTAGAGCGTGCAAGTTGCAGCAAAACTTTTAAATCGGAAGATTTAAGGCTAGAACAAGACCTTTGCTGTACGGAAAATGAAGGCAAAGATGAAGTCTTAGGATTTATGTTAAGCAGAACCAACCCTTATATTAATATCGAGATCCATGGAAACAGCGAGGAACTAGTAGAGCCTTCAAGAGGAGCTATTAACTTGATTGGAACATTAGATAATCCTCCGAATTACCCTGATGAAAACTGTAGATTGAGTGATGGTAACAATTTTGATACACGATTGGAACTTTCTTTAAGATGTTCTTCTATGAGCTCATGTAAGCAAGCAAATGAAGAATCTGAGGAAAGACAAAGATTAAATCATTCAAATATGTCTGCCTTTTCTTGGTACAATGGTAGCAAGTTATTGCAGCCTTTTTTTCCATCACCACCAATTACTTCTGGTATAGTACACAACACGGTTGGGGGTTCTCATAAATCCCATAAATTATCTGGAAATAGTGTTGATACTTCATGTCAGTATGGTGGCACAAATCAAAATCAGGAGAACATGACCACTCTGGTCATTGGTCAGTTTGAACATGTTGAACCAAGATTTTCAAACAGTCAATTTGGAATCTTCTCTGGGAATGGGGTTACCTCTGATCTTCCATCTTTGGGACATGATAATGTTTTCACTTCTGTTTTATGTGCACAATCTGATGTTCATTCCATATGCAATCCCAAACCAGTACGCCAGGAAGAGAGTTCTTCCTTTCCCACAAGTCGATCCTCACAATCCAGTCCCGAAAGTCAGAACTCAGAACAACATTGTCACCAATGTGATGAGGCTGCCTATACTTCCCTTGATAAAAATATACATGATAAAAGCAATTTGGATCATGCAAGCCTTGATTCTCCGGCTGCTAGTCAAACTGCTGGTAATAATAGTTTATGCCATGATGGTGCAAATCATATTAATAGTGCACATGGAAACATAGGCAGTGGAAGTGATGGAAATGCTACTTCAAGTGTGGTAACCAAGAACAACCCTGGAATTTTTAGTGACAGTAATTTCCCTGATTATGGTGGATCTAGAGGAACAAAATCTTATCACTCCAGTCAAAGAGAAGCAGCTCTAGAAAAGTTTCGACTGAAACGAAAGGAAAGATGCTATGAGAAAAAGGTTCGATATCAAAGCCGTAAAAGACTTGCAGAGCAGCGCCCTCGGGTCAAAGGGCAATTTGTACGCCAAGTACATAATGATCATCCAGTCACAGATGCTAATGTTCACTCATAA 2085 0.3962 MKQSNTKMKNGSDSNCSEDMVRWERILPKMVLRVLLIEPDYSTRHIIAALLRNCSYKVTAVRDGLKAWQTLKRKAPDIDLILTEVQLPAISGFPLLTLIMEHDICKNIPVIMMSSQDSVSMVLKCMSKGAADFLVKPVRRNELGNLWQHVWRRHAIRSSPQNTLPQKKLKTASEDNSASNQISGSVASAQKINECSEKWSEAQSTYTSPNFQAESAYMENMPDASQMKSSLKLSNIDVVKHEESTTFESESAKHDDGSGETFTAEESITFVLERASCSKTFKSEDLRLEQDLCCTENEGKDEVLGFMLSRTNPYINIEIHGNSEELVEPSRGAINLIGTLDNPPNYPDENCRLSDGNNFDTRLELSLRCSSMSSCKQANEESEERQRLNHSNMSAFSWYNGSKLLQPFFPSPPITSGIVHNTVGGSHKSHKLSGNSVDTSCQYGGTNQNQENMTTLVIGQFEHVEPRFSNSQFGIFSGNGVTSDLPSLGHDNVFTSVLCAQSDVHSICNPKPVRQEESSSFPTSRSSQSSPESQNSEQHCHQCDEAAYTSLDKNIHDKSNLDHASLDSPAASQTAGNNSLCHDGANHINSAHGNIGSGSDGNATSSVVTKNNPGIFSDSNFPDYGGSRGTKSYHSSQREAALEKFRLKRKERCYEKKVRYQSRKRLAEQRPRVKGQFVRQVHNDHPVTDANVHS 694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g0607 694 SUPERFAMILY CheY-like 32 164 IPR011006 -
Lal6g0607 694 PANTHER TWO-COMPONENT RESPONSE REGULATOR 17 229 IPR045279 GO:0009736
Lal6g0607 694 PANTHER TWO-COMPONENT RESPONSE REGULATOR 233 686 IPR045279 GO:0009736
Lal6g0607 694 MobiDBLite consensus disorder prediction 510 541 - -
Lal6g0607 694 MobiDBLite consensus disorder prediction 565 636 - -
Lal6g0607 694 ProSiteProfiles CCT domain profile. 638 680 IPR010402 GO:0005515
Lal6g0607 694 Gene3D - 30 254 - -
Lal6g0607 694 ProSiteProfiles Response regulatory domain profile. 33 151 IPR001789 GO:0000160
Lal6g0607 694 PANTHER PRR RESPONSE REGULATOR 233 686 - -
Lal6g0607 694 PANTHER PRR RESPONSE REGULATOR 17 229 - -
Lal6g0607 694 SMART REC_2 32 147 IPR001789 GO:0000160
Lal6g0607 694 MobiDBLite consensus disorder prediction 559 638 - -
Lal6g0607 694 CDD psREC_PRR 34 137 - -
Lal6g0607 694 MobiDBLite consensus disorder prediction 158 184 - -
Lal6g0607 694 Pfam Response regulator receiver domain 34 143 IPR001789 GO:0000160
Lal6g0607 694 MobiDBLite consensus disorder prediction 512 541 - -
Lal6g0607 694 Pfam CCT motif 638 680 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal6g0607 Lal-Chr6 3899340 3904568 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal6g0607 631 682 Response Regulator Gene Family AT5G24470 78.846 2.42e-19 90.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Lal6g0607 Response_reg 5.2e-20 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal6g0607 K12130 - gmx:100791698 735.717
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal6g0607 6 3899340 3904568 Lal6g0607 6 3899340 3904568 ECH
Lal6g0607 6 3899340 3904568 Lal18g0305 18 2513095 2516238 ECH
Lal6g0607 6 3899340 3904568 Lal18g0305 18 2513095 2516238 LSH