Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g0606 ATGATGGATAGGCTTCAAGGACTTGGCCCCCTCAATTCCTGTTTCATAGGTGACCATTTTGAAGTGAATTGTTTTGAGCAAGATGTGGTTGATGTAAAAAGGTTGAGATTTGTGGAAGATGAACAACAACTTATGATATCAAGTTTAGAGGATAACATGCCATTCTTGCAAATGCTTCAAAGCGTGGAATCTACTCCACACATTTTCCCTTACAAAGAGGCAAGTTTTAGAACACTTCTGAGTCTCCAAAACATGAAGAAACAACAACCATGGGAAAGGACGGCCTACATTCAAACAGCAATGGAACTTGAGAGTTGTGTGACACATGACATATTGGAGATACAGTCACCAATGAAATCTGAAAGCAATGAACTTCAACAACAGACACCTTCATGTGTTGAGAAAATGATGAGTTATGATGAGTGCAACCATGCTATTATTGCTAATGCTAACACACAATCATGCCATGAAACTGAGATATCTACAAGGGAAAAAAGGAAGAGAAAGAGAACAAGACCAACTAAGAACAAAGAAGATGTGGAGAATCAACGCATGACTCACATTGCTGTTGAACGCAATAGGAGACGCCAAATGAATGACCATCTCAGTGTTCTAAGGTCTCTCGTGCCACCTTCCTATATTCAAAGGGGTGACCAAGCTTCTATAATTGGAGGTGCAATTGATTTTGTGAAGGAGTTGGAGCAGTTGCTTCAATCACTTGAAGTACAAAAAATGATGAGAAAGAATGAAGAGAGTGGTAATGGTTCTGCTTCAAATGGGTTGTGTAAGCCAGCAGGGTCATTATCAAGTGAAGAAGCAAAGTTTGTAGATGAAGTGAGGGCAGAAATGAAGTCAAATTTCGGGCACATAGAGGTTACTTTGATTCAAACCCATGTTAACTTGAAAATTGAGTGCCAAAGGAGGCCTAGTCAATTAATAAAGGTCATTCTTGCTTTAGAAGACCTTAGACTAACTATTCTGCACCTCAACATTACTTCCTCTGTGACTTCTGTCCTCTACTCTCTCAATCTCAAGATTGAAGAAGAGTGCAAGCTAAGTTCAGCAAATGAGATTGCAGAAACAGTTCATCAAATATTCAGCTTCATTAATGGTAACTAG 1119 0.3923 MMDRLQGLGPLNSCFIGDHFEVNCFEQDVVDVKRLRFVEDEQQLMISSLEDNMPFLQMLQSVESTPHIFPYKEASFRTLLSLQNMKKQQPWERTAYIQTAMELESCVTHDILEIQSPMKSESNELQQQTPSCVEKMMSYDECNHAIIANANTQSCHETEISTREKRKRKRTRPTKNKEDVENQRMTHIAVERNRRRQMNDHLSVLRSLVPPSYIQRGDQASIIGGAIDFVKELEQLLQSLEVQKMMRKNEESGNGSASNGLCKPAGSLSSEEAKFVDEVRAEMKSNFGHIEVTLIQTHVNLKIECQRRPSQLIKVILALEDLRLTILHLNITSSVTSVLYSLNLKIEEECKLSSANEIAETVHQIFSFINGN 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g0606 372 SMART finulus 188 239 IPR011598 GO:0046983
Lal6g0606 372 CDD bHLH_AtFAMA_like 185 254 - -
Lal6g0606 372 Coils Coil 230 250 - -
Lal6g0606 372 Pfam Helix-loop-helix DNA-binding domain 183 234 IPR011598 GO:0046983
Lal6g0606 372 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 182 233 IPR011598 GO:0046983
Lal6g0606 372 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 182 247 IPR036638 GO:0046983
Lal6g0606 372 PANTHER MAX DIMERIZATION, MAD 24 371 - -
Lal6g0606 372 Gene3D - 173 257 IPR036638 GO:0046983
Lal6g0606 372 MobiDBLite consensus disorder prediction 156 180 - -
Lal6g0606 372 PANTHER TRANSCRIPTION FACTOR BHLH70 24 371 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal6g0606 Lal-Chr6 3891945 3895839 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal6g0606 43 371 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G01460 42.560 2.58e-68 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lal6g0606 HLH 1.6e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal6g0606 - - gmx:100789928 456.832
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal6g0606 6 3891945 3895839 Lal6g0606 6 3891945 3895839 ECH
Lal6g0606 6 3891945 3895839 Lal22g0544 22 3663095 3667074 LSH