Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g0601 ATGGCTTTTGTCTTTAGGCCTCACAATCACAAATCTGAACTCAAATATCATCCCATAACTCAAACTCAACTTGGTGGGGCATCACTCTATAATTCCATGGAGGTTGCTATGCAAGGATTGAAAGGGTTTAATGATAGCAGGGAAGAGGAAGAGGAAGAGGAAGCAACAACTGAAGAAATCATCACAAGAGAAGAAAGCAGCAGCAGGTTACACCATGAACAAGAAGATTATGCAGCAGCAGCTTCTTCCAATTTCATGAATCATCACACAAAGCAGATAGATTTCATGGACTTGTCAATGAGAGGGAGCAACAACAACATCAACAACAAAGAGACCATTAATATGAATGGTGAAGTTGAAGCCAATTTGCAACAAGGATCTCAATCTTCTTCACAAGTTATAACTGAGAAGGAGCATATGTTTGATAAAGTGGTGACACCAAGTGATGTAGGGAAGCTGAACAGGTTGGTGATACCAAAACAGCATGCTGAGAAGTACTTCCCCCTTGATTCAACCTCAAATGAGAAAGGCCTTTTGCTCAGTTTTGAAGATAGGAATGGGAAATTGTGGAGGTTCAGGTACTCTTATTGGAACAGCAGCCAGAGCTATGTGATGACCAAAGGATGGAGTCGTTTTGTGAAGGAAAAGAAGCTTGATGCTGGTGACATTGTCTCCTTTCAGCGCGGCGTTGGTGAGTTGTACAGGCATAGGTTGTTCATTGATTGGAGGAGAAGACCTGATCAATATCATGGAGATGTTGGTGTACCTGATCCTAATTCAGCAACACTCATTACTCCTTTGTTTCTTCCTAATCAAACACACTTGTCACAGTACTCTACTAGATGGGGTGGTAGATTATACTCCTTGCCTTCACCTCCACAAACAGACCAACCAAGGCACCACCACTGTGAGCATTATCAGTACCCCAATTACAACATGTACCCTTTTCATAATCAACATCAGCACCATGGTGGTGGTGGTGGAAGTGGAAGCCATCACTACATGAACAACTATAATGAGGCGTGTAACTCAGGATCTGGCTCACTCTATTACCTGAGGTCAGAAACACCTTCAATGCAAAGGAGTGATCATCAAAGCTTTATGACAAGGCAACAACAACATGAGGAAGGAGGAGGTAATAATATTTCTCCTATGATCATTGATTCAGTGCCTGTTGCTCATCATCATCAACAGCAACATGGGGGTTACAAAAATGGTTCTAGTAATACTAATAGTGCATCAAAAAAGTTAAGGCTATTTGGAGTGAACATGGAATGTGGTTCTTCACCAGCAGAAGACCCCAAATGTTGTAGTATACCACATGCCTCTTCTTCTCTACCACCACTTTCAACATCAGCAAGGTTTGGAGATAATCAAAGAGGGGAAGCTTCTTCAATGCATTTTGACTAG 1410 0.4184 MAFVFRPHNHKSELKYHPITQTQLGGASLYNSMEVAMQGLKGFNDSREEEEEEEATTEEIITREESSSRLHHEQEDYAAAASSNFMNHHTKQIDFMDLSMRGSNNNINNKETINMNGEVEANLQQGSQSSSQVITEKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSTSNEKGLLLSFEDRNGKLWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRGVGELYRHRLFIDWRRRPDQYHGDVGVPDPNSATLITPLFLPNQTHLSQYSTRWGGRLYSLPSPPQTDQPRHHHCEHYQYPNYNMYPFHNQHQHHGGGGGSGSHHYMNNYNEACNSGSGSLYYLRSETPSMQRSDHQSFMTRQQQHEEGGGNNISPMIIDSVPVAHHHQQQHGGYKNGSSNTNSASKKLRLFGVNMECGSSPAEDPKCCSIPHASSSLPPLSTSARFGDNQRGEASSMHFD 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g0601 469 SUPERFAMILY DNA-binding pseudobarrel domain 137 244 IPR015300 -
Lal6g0601 469 SMART B3_2 141 246 IPR003340 GO:0003677
Lal6g0601 469 Pfam B3 DNA binding domain 141 245 IPR003340 GO:0003677
Lal6g0601 469 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 78 453 IPR044800 GO:0003700
Lal6g0601 469 MobiDBLite consensus disorder prediction 447 469 - -
Lal6g0601 469 ProSiteProfiles B3 DNA-binding domain profile. 141 246 IPR003340 GO:0003677
Lal6g0601 469 MobiDBLite consensus disorder prediction 357 379 - -
Lal6g0601 469 MobiDBLite consensus disorder prediction 393 412 - -
Lal6g0601 469 MobiDBLite consensus disorder prediction 42 70 - -
Lal6g0601 469 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR NGA2 78 453 - -
Lal6g0601 469 Gene3D - 134 252 IPR015300 -
Lal6g0601 469 MobiDBLite consensus disorder prediction 357 386 - -
Lal6g0601 469 CDD B3_DNA 139 228 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal6g0601 Lal-Chr6 3855351 3857717 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal6g0601 128 429 RAV Transcription Factor Family AT2G46870 47.078 2.93e-75 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Lal6g0601 B3 2.8e-28 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal6g0601 - - gmx:100778733 443.351
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal6g0601 6 3855351 3857717 Lal6g0601 6 3855351 3857717 ECH
Lal6g0601 6 3855351 3857717 Lal22g0540 22 3605095 3609517 LSH
Lal6g0601 6 3855351 3857717 Lal18g1065 18 13711327 13713479 LSH