Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g0590 ATGGGTGGTTCAATCTCAAGTAACACATTGAATGAGTCACCTAGCAATGAGATAAATACAAAGATCATAGTGGCAGCTGTAATATTCCTCTTCATGGTGATATTATTTGTAATCTTACTCAATCTCTATTCCAGATGGTTCTGGTGGCGCATTGAGGAGGAAACCACTGCTCCTCCACCACGCCGCCACCGCCGATTTGTCTTTGCACCGGGGCAAGAGTCAGTTACTAGTGTTGGCACTCAGCAACTTGGTCTTGACCCTGAAATTCTTAAGTCCTTGCCTTTATTGGTATTCAAACCTGAGGATTTCAAAGATGGTTTGGAATGTACAGTTTGCCTCTCTGAGATTGTTGAAGGTGAAATAACAAGGCTTTTACCTAAATGCAATCATGGGTTTCATGTATATTGCATAGATATGTGGTTCCATTCCCATTCTACTTGTCCTCTTTGTAGGAACCTAGTTGCTTCTGAATCTGAATCCACTAATGATATTAGTAGTAGTTCAAATGCTGAAGAGAATTTGACTAGGAATAATAGTGAGTCATTAGAAGCAGAGAATTCAAGTGCTATGAGTGACTTAGAGTCTCAAAGTTTTCCAACAAATGTACTTGTTTGGGGAAACCCAAACCAAGTAAGTACTTATGTTAATTTTTTCATGGAAGAAGGCACTTCTGAGCAGCCACCTAACTCTTCAATATTTACTCCATCTTCTTCAAGCAGTGATGATAATGGTAATAGTGGATGCCATGAAATGTTGATGATTGATATATCAAGTGAGTTAACTTCCTCATCATTATCAATATCACCTTCTTCTGAGACAAGGTGTGCTGAAGATGAGTTGAAATCACCAATGAGTACCAAATTGAGGTCATTTAGGAGGCTTTTAAGCAGGGATAAAAAGTTAAGTACCTGTAGTCCTGGTTCTATGGATGTGGAACAAGCATAG 945 0.3915 MGGSISSNTLNESPSNEINTKIIVAAVIFLFMVILFVILLNLYSRWFWWRIEEETTAPPPRRHRRFVFAPGQESVTSVGTQQLGLDPEILKSLPLLVFKPEDFKDGLECTVCLSEIVEGEITRLLPKCNHGFHVYCIDMWFHSHSTCPLCRNLVASESESTNDISSSSNAEENLTRNNSESLEAENSSAMSDLESQSFPTNVLVWGNPNQVSTYVNFFMEEGTSEQPPNSSIFTPSSSSSDDNGNSGCHEMLMIDISSELTSSSLSISPSSETRCAEDELKSPMSTKLRSFRRLLSRDKKLSTCSPGSMDVEQA 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g0590 314 SMART ring_2 109 150 IPR001841 -
Lal6g0590 314 MobiDBLite consensus disorder prediction 222 246 - -
Lal6g0590 314 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 73 156 IPR013083 -
Lal6g0590 314 SUPERFAMILY RING/U-box 89 156 - -
Lal6g0590 314 MobiDBLite consensus disorder prediction 222 248 - -
Lal6g0590 314 PANTHER RING-H2 FINGER PROTEIN ATL3 6 308 - -
Lal6g0590 314 CDD RING-H2_EL5_like 108 151 - -
Lal6g0590 314 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 6 308 IPR044675 -
Lal6g0590 314 MobiDBLite consensus disorder prediction 161 193 - -
Lal6g0590 314 Pfam Ring finger domain 108 151 IPR001841 -
Lal6g0590 314 ProSiteProfiles Zinc finger RING-type profile. 109 151 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal6g0590 Lal-Chr6 3777622 3778566 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal6g0590 17 299 C3H Transcription Factor Family AT1G53820 39.274 2.73e-58 188