Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g0583 ATGGCTCCCTCTTCCAACAAAAATATTGCAACAACCACAATACAACACAACAAGAGAAAGATCACGATCAAGAAACTTGAACCAAACACCAACAAGTGCAATGTAACCTTCTCCAAACGCAAACTAGGGCTTTTTAACAAAGTTACTGAAATTTCCATTCTATGCCAAGCTCAAACTGCATTGATCCTTTCTTCTCAACAAGGCAAGCTCTATGCTTGCGGCTACCCTGGCCCCGATTTGGTCATCTGCCGCTTCCTCACCAACGGTTCTCCGGTGCAACACAGCCGCACCAGCAAGAAAGAGCAGCAAGAATTTGTTGAAACCCTAAGGCTTGAATATGAGGCTGCTCACAAGAAGTTGAAAGAAGAGAAGAAGAGATTGGATGAGATCCGACAGACACATAATGGTCGTTTGGATTTAACTCCTTGGTGGAATATAGATATTGGAGGATCTTGA 456 0.4342 MAPSSNKNIATTTIQHNKRKITIKKLEPNTNKCNVTFSKRKLGLFNKVTEISILCQAQTALILSSQQGKLYACGYPGPDLVICRFLTNGSPVQHSRTSKKEQQEFVETLRLEYEAAHKKLKEEKKRLDEIRQTHNGRLDLTPWWNIDIGGS 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g0583 151 ProSiteProfiles MADS-box domain profile. 16 77 IPR002100 GO:0003677|GO:0046983
Lal6g0583 151 SUPERFAMILY SRF-like 17 86 IPR036879 GO:0003677|GO:0046983
Lal6g0583 151 SMART madsneu2 16 76 IPR002100 GO:0003677|GO:0046983
Lal6g0583 151 Gene3D - 30 111 IPR036879 GO:0003677|GO:0046983
Lal6g0583 151 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 10 139 - -
Lal6g0583 151 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 30 72 IPR002100 GO:0003677|GO:0046983
Lal6g0583 151 PRINTS MADS domain signature 19 39 IPR002100 GO:0003677|GO:0046983
Lal6g0583 151 PRINTS MADS domain signature 39 54 IPR002100 GO:0003677|GO:0046983
Lal6g0583 151 PRINTS MADS domain signature 54 75 IPR002100 GO:0003677|GO:0046983
Lal6g0583 151 Coils Coil 106 133 - -
Lal6g0583 151 PANTHER MADS BOX PROTEIN 10 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal6g0583 Lal-Chr6 3744530 3744985 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal6g0583 18 144 Type I MADS-box Gene Family AT5G60440 33.588 6.14e-17 73.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lal6g0583 SRF-TF 5.8e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal6g0583 - - lang:109356483 191.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal6g0583 6 3744530 3744985 Lal22g0520 22 3461460 3462149 LSH
Lal6g0583 6 3744530 3744985 Lal18g1081 18 13873414 13874067 LSH