Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g0580 ATGTGTGGAGGAGCTATTATCTCCGATTTCATTCCGTCCGCCGGCATGGCGGCAGGGATGTCCCGGCGTGTGACCGCCGACATATTGTGGCCAAATTTGAGGAACAAGGCGGGGAAGAAGTTCTCGAAGCTTCCGACGCCTGAGGCGGTGGCGTTGAACGATGATTTCGAGGCTGATTTTCGAAATTTCAAGGATGATTCTGACATGGAAGAAGATGATGATGACTTGATTGAAAGTGGTTTCGCTCCCACGAAGCCCTCTAATCAGAATCCGAAGTCTCTGTCTCGTGGATCTACAGCTATGAAATTGGATGGGCAAGCTGAGGAGTTTTCTAAGAGAAAGAGGAAGAATCAGTATCGTGGAATCCGTCAGCGTCCATGGGGAAAATGGGCTGCTGAGATTCGGGATCCGAGAAAAGGGGTTCGTGTTTGGCTTGGAACCTTCAACACTGCTGAAGAAGCTGCAAGAGCTTATGATGCCGAAGCGAGGAGGATCCGTGGCAAGAAAGCCAAGGTGAATTTCCCTGTTATGGCTCCAGCTGCAACCCCAAATTGTCTTAAGGCAAGGAAGGAAAATATCAATTTCGTTCAACCGAAAGTGAAGAAGATGTTCAATCTGGAGGACTACTTTATGGATCAAGTGGAACAGAAACCCGAAATTAACCAGGATTCTAACATAGGTCCCTTCCCTGGAAATGGACTTGTGCTCACACCCCTTGATGCATCTGATAATGTTACAGCTTACTTCAGTTCCGAGTACTCAACCGATTCATTTGATTATTCTGATCTCGGATGGGGCAAACAAAGCCCGAAGACTCCAGAGAACTCATCTGTGCTTTCTGCTCCTATGGAAGGGCAATATGAATTTGTTGAGGTTGCTAATCAGCAGAAAAACCTACAACCTAACTCTCAGGATATGATGTTCATGGAAGATCAAGCCGAAAAAACACTAACTGAGGACCTCATAGATATTGAATCCCACATGAATTTCTTTGAAGATTCTCCTTACCTTGGTAGGAGCTGGGATGATGCTTCATTAGCATCATTCCTTGGTGGAGACACAACTCAGGATGCTGGAAATCCAATCAACCTTTGGAATTTTGATGACTTGCCTTCAGTGGCTGGTGGAGTTTTCTGA 1137 0.4609 MCGGAIISDFIPSAGMAAGMSRRVTADILWPNLRNKAGKKFSKLPTPEAVALNDDFEADFRNFKDDSDMEEDDDDLIESGFAPTKPSNQNPKSLSRGSTAMKLDGQAEEFSKRKRKNQYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDAEARRIRGKKAKVNFPVMAPAATPNCLKARKENINFVQPKVKKMFNLEDYFMDQVEQKPEINQDSNIGPFPGNGLVLTPLDASDNVTAYFSSEYSTDSFDYSDLGWGKQSPKTPENSSVLSAPMEGQYEFVEVANQQKNLQPNSQDMMFMEDQAEKTLTEDLIDIESHMNFFEDSPYLGRSWDDASLASFLGGDTTQDAGNPINLWNFDDLPSVAGGVF 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g0580 378 CDD AP2 118 176 IPR001471 GO:0003700|GO:0006355
Lal6g0580 378 PRINTS Ethylene responsive element binding protein signature 119 130 IPR001471 GO:0003700|GO:0006355
Lal6g0580 378 PRINTS Ethylene responsive element binding protein signature 141 157 IPR001471 GO:0003700|GO:0006355
Lal6g0580 378 SUPERFAMILY DNA-binding domain 118 176 IPR016177 GO:0003677
Lal6g0580 378 Gene3D AP2/ERF domain 117 177 IPR036955 GO:0003700|GO:0006355
Lal6g0580 378 PANTHER EREBP TRANSCRIPTION FACTOR 1 372 - -
Lal6g0580 378 SMART rav1_2 118 181 IPR001471 GO:0003700|GO:0006355
Lal6g0580 378 MobiDBLite consensus disorder prediction 82 100 - -
Lal6g0580 378 ProSiteProfiles AP2/ERF domain profile. 118 175 IPR001471 GO:0003700|GO:0006355
Lal6g0580 378 MobiDBLite consensus disorder prediction 67 121 - -
Lal6g0580 378 PANTHER DNA-BINDING DOMAIN 1 372 IPR044808 GO:0003700|GO:0009873
Lal6g0580 378 Pfam AP2 domain 118 167 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal6g0580 Lal-Chr6 3728285 3731759 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal6g0580 1 378 AP2-EREBP Transcription Factor Family AT1G53910 42.857 9.48e-58 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Lal6g0580 AP2 1.9e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal6g0580 K09286 - gmx:547957 406.757
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal6g0580 6 3728285 3731759 Lal18g0316 18 2636002 2638344 LSH